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The map label for this gene is nirD [H]

Identifier: 119718244

GI number: 119718244

Start: 4250985

End: 4251368

Strand: Reverse

Name: nirD [H]

Synonym: Noca_4025

Alternate gene names: 119718244

Gene position: 4251368-4250985 (Counterclockwise)

Preceding gene: 119718245

Following gene: 119718242

Centisome position: 85.27

GC content: 73.44

Gene sequence:

>384_bases
ATGGGCACCGAGGAGTCGGCAACCGGGCGGTGGCAGCCGGTCTGCCGGGTCGCCGAGCTCGAGGTCGAGCGGGGCGCGAC
CGCGCTGGTGCACGGCCAGGCGATCGCGATCTTCCGCACCCAGGACGACCGGGTCTACGCGCTGGGCAACCACGACCCGT
TCGCTCGGGCATCGGTCATCGCCCGCGGCATCGTCGGACTGCGCGGGGACGTGCCGTTCGTGGCGTCACCGACGCACAAG
CACGCCTTCGACCTGCGCAGCGGGCGGTGCCTGGAGGACGACCACGTGTCGGTCCCGGCCTACGAGGTCCGGGTCGCCGA
CGGCGTGGTGCTCGTGGGGCACCGCAAGGCGGTGGTCACGCCGACCCGTGGTGACGGGGCGTGA

Upstream 100 bases:

>100_bases
GCTCGGCCTCCCCGACGCCGAGCGTTTCCACGGCTGTTACACGCCGAAACAGGGACTCAACACCCCGGGCCTAGGTTCGT
CGGACCAGGAAGGGGCTCCG

Downstream 100 bases:

>100_bases
CCAGGGCGGTCGCGATCGCGGCGACGCCCTCGCCGCGTCCCGTCAGGCCGAGCCCGTCGGCGGTGGTGGCCGAGACGCTC
ACCGGCGCGCCCACGGCGGC

Product: nitrite reductase (NAD(P)H), small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MGTEESATGRWQPVCRVAELEVERGATALVHGQAIAIFRTQDDRVYALGNHDPFARASVIARGIVGLRGDVPFVASPTHK
HAFDLRSGRCLEDDHVSVPAYEVRVADGVVLVGHRKAVVTPTRGDGA

Sequences:

>Translated_127_residues
MGTEESATGRWQPVCRVAELEVERGATALVHGQAIAIFRTQDDRVYALGNHDPFARASVIARGIVGLRGDVPFVASPTHK
HAFDLRSGRCLEDDHVSVPAYEVRVADGVVLVGHRKAVVTPTRGDGA
>Mature_126_residues
GTEESATGRWQPVCRVAELEVERGATALVHGQAIAIFRTQDDRVYALGNHDPFARASVIARGIVGLRGDVPFVASPTHKH
AFDLRSGRCLEDDHVSVPAYEVRVADGVVLVGHRKAVVTPTRGDGA

Specific function: Required for activity of the reductase [H]

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis nasE [H]

Homologues:

Organism=Escherichia coli, GI1789766, Length=104, Percent_Identity=40.3846153846154, Blast_Score=88, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012748
- InterPro:   IPR017881
- InterPro:   IPR017941 [H]

Pfam domain/function: NA

EC number: =1.7.1.4 [H]

Molecular weight: Translated: 13639; Mature: 13507

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTEESATGRWQPVCRVAELEVERGATALVHGQAIAIFRTQDDRVYALGNHDPFARASVI
CCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCEEEEEEECCCEEEEECCCCCHHHHHHH
ARGIVGLRGDVPFVASPTHKHAFDLRSGRCLEDDHVSVPAYEVRVADGVVLVGHRKAVVT
HHHHCCCCCCCCEEECCCCCCEEECCCCCEECCCCCCCCEEEEEEECCEEEEECCEEEEE
PTRGDGA
CCCCCCC
>Mature Secondary Structure 
GTEESATGRWQPVCRVAELEVERGATALVHGQAIAIFRTQDDRVYALGNHDPFARASVI
CCCCCCCCCCCCEEEEEEEEECCCCEEEEECCEEEEEEECCCEEEEECCCCCHHHHHHH
ARGIVGLRGDVPFVASPTHKHAFDLRSGRCLEDDHVSVPAYEVRVADGVVLVGHRKAVVT
HHHHCCCCCCCCEEECCCCCCEEECCCCCEECCCCCCCCEEEEEEECCEEEEECCEEEEE
PTRGDGA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]