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The map label for this gene is csd [H]

Identifier: 119718029

GI number: 119718029

Start: 4022533

End: 4023732

Strand: Reverse

Name: csd [H]

Synonym: Noca_3807

Alternate gene names: 119718029

Gene position: 4023732-4022533 (Counterclockwise)

Preceding gene: 119718030

Following gene: 119718028

Centisome position: 80.7

GC content: 74.0

Gene sequence:

>1200_bases
ATGACCTTCGACGTCGACCGCATCCGCAAAGACTTCCCGGCCCTCGACTCCGGCACCGCCTACTTCGACGGGCCGGGCGG
CAGCCAGGTGCCGCGGCAGGTGGCCGAGGCGGTGGCGGGGACGATGACGTCCGGGATCTCCAACCGTGGCCAGGTCACGG
CGGCCGAGCAGCGCGCCGAGGACGTCGTGGTCGGTGCGCGGGCGGCGGTCGCGGACCTGCTCGGCTGCGACCCGGGCGGG
GTGGTGTTCGCGCGGTCGATGACGCAGGCGACGTACGACGTCTCCCGCGCGCTCGCCAAGGAGTGGGGGCCGGGTGACGA
GGTGGTGGTCACTCGCCTGGACCACGACGGGAACATCCGGCCGTGGGTGCAGGCGGCGCAGGCGGCGGGCGCGACCGTGC
GGTGGGCCGGGTTCGACCAGGAGACCGGCGAGCTGGGCGTCGACGACGTCCGCGAGCAGCTGTCGGCAAGGACCAAGCTG
GTCGCGGTGACGGGTGCGTCGAACGTCCTCGGCACCCGGCCCGACGTGCCGGCGATCGCGGCTGCGGTGCACGAGGTGGG
TGCCCTGCTCTACGTCGACGGGGTGCACCTGACCCCGCACGTGCCCGTGGACGTCGCGGCGATCGGCGCCGACTTCTACG
CGTGCTCGCCGTACAAGTTCCTGGGCCCGCACCACGGCATCGTGGTCGCCGCACCGGAGCTCCTGGAGCGGATCCACCCG
GACAAGCTGGTGCCGGCCGGCGACCAGGTCCCGGAGCGGTTCGAGCTCGGGACGCTGCCCTACGAGCTGCTCGCCGGCAC
CACGGCTGCAGTCGACTACCTCGCGGGCCTCGCCTCGGACGCGGCGGACCGGCGGACCCGGGTGCTGGAGTCGATGCGGG
CAGTGGAGCAGCACGAGGAGGCCCTGTTCGCGAGGCTGTTGGACGGGCTGCGCGGGATCGACGCCGTCACGCTGTACGGC
GACCCGGAGCGGCGCACCCCGACCGCGTTCTTCTCCGTCGCCGGCCGGGCGGACCAGGAGGTCTACGAGCGCTTGGCCGC
CGCGGGGGTGAACGCTCCGGCGAGCAGCTTCTACGCGATCGAGGCATCGCGGTGGATCGGCCTCGGCGACACCGGCGCGG
TGCGGGCCGGGCTCGCGCCGTACAGCAGCGCCGACGACGTCGAGCGGCTGCTCGCGGGGGTCGCCGAGATCGCCGGGTGA

Upstream 100 bases:

>100_bases
GACTGGATCGCGTGCGAGCGGGGTCAGGACCGGCCCTCGTCCGGAGGCCGATGAGCCGACCGCCGAGCCTCAGATCGACT
CGTGCGGAGAAGATGTCCCC

Downstream 100 bases:

>100_bases
GGGTGGCAGACTCCCGGCATGCCGTCGCGACAGACGACGTACGACGACTTCGTGGTCGCGCGCAACCCGGAGGCCGACTC
CTCGTTGCCGTACCTGTTGC

Product: cysteine desulfurase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MTFDVDRIRKDFPALDSGTAYFDGPGGSQVPRQVAEAVAGTMTSGISNRGQVTAAEQRAEDVVVGARAAVADLLGCDPGG
VVFARSMTQATYDVSRALAKEWGPGDEVVVTRLDHDGNIRPWVQAAQAAGATVRWAGFDQETGELGVDDVREQLSARTKL
VAVTGASNVLGTRPDVPAIAAAVHEVGALLYVDGVHLTPHVPVDVAAIGADFYACSPYKFLGPHHGIVVAAPELLERIHP
DKLVPAGDQVPERFELGTLPYELLAGTTAAVDYLAGLASDAADRRTRVLESMRAVEQHEEALFARLLDGLRGIDAVTLYG
DPERRTPTAFFSVAGRADQEVYERLAAAGVNAPASSFYAIEASRWIGLGDTGAVRAGLAPYSSADDVERLLAGVAEIAG

Sequences:

>Translated_399_residues
MTFDVDRIRKDFPALDSGTAYFDGPGGSQVPRQVAEAVAGTMTSGISNRGQVTAAEQRAEDVVVGARAAVADLLGCDPGG
VVFARSMTQATYDVSRALAKEWGPGDEVVVTRLDHDGNIRPWVQAAQAAGATVRWAGFDQETGELGVDDVREQLSARTKL
VAVTGASNVLGTRPDVPAIAAAVHEVGALLYVDGVHLTPHVPVDVAAIGADFYACSPYKFLGPHHGIVVAAPELLERIHP
DKLVPAGDQVPERFELGTLPYELLAGTTAAVDYLAGLASDAADRRTRVLESMRAVEQHEEALFARLLDGLRGIDAVTLYG
DPERRTPTAFFSVAGRADQEVYERLAAAGVNAPASSFYAIEASRWIGLGDTGAVRAGLAPYSSADDVERLLAGVAEIAG
>Mature_398_residues
TFDVDRIRKDFPALDSGTAYFDGPGGSQVPRQVAEAVAGTMTSGISNRGQVTAAEQRAEDVVVGARAAVADLLGCDPGGV
VFARSMTQATYDVSRALAKEWGPGDEVVVTRLDHDGNIRPWVQAAQAAGATVRWAGFDQETGELGVDDVREQLSARTKLV
AVTGASNVLGTRPDVPAIAAAVHEVGALLYVDGVHLTPHVPVDVAAIGADFYACSPYKFLGPHHGIVVAAPELLERIHPD
KLVPAGDQVPERFELGTLPYELLAGTTAAVDYLAGLASDAADRRTRVLESMRAVEQHEEALFARLLDGLRGIDAVTLYGD
PERRTPTAFFSVAGRADQEVYERLAAAGVNAPASSFYAIEASRWIGLGDTGAVRAGLAPYSSADDVERLLAGVAEIAG

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=430, Percent_Identity=26.9767441860465, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1789175, Length=421, Percent_Identity=28.7410926365796, Blast_Score=131, Evalue=8e-32,
Organism=Escherichia coli, GI48994898, Length=384, Percent_Identity=23.1770833333333, Blast_Score=70, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6319831, Length=347, Percent_Identity=22.7665706051873, Blast_Score=63, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR020578
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 41970; Mature: 41839

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFDVDRIRKDFPALDSGTAYFDGPGGSQVPRQVAEAVAGTMTSGISNRGQVTAAEQRAE
CCCCHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHH
DVVVGARAAVADLLGCDPGGVVFARSMTQATYDVSRALAKEWGPGDEVVVTRLDHDGNIR
HHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
PWVQAAQAAGATVRWAGFDQETGELGVDDVREQLSARTKLVAVTGASNVLGTRPDVPAIA
HHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHH
AAVHEVGALLYVDGVHLTPHVPVDVAAIGADFYACSPYKFLGPHHGIVVAAPELLERIHP
HHHHHHCEEEEECCEEECCCCCEEHHHHCCCCEECCCHHHCCCCCCEEEECHHHHHHCCC
DKLVPAGDQVPERFELGTLPYELLAGTTAAVDYLAGLASDAADRRTRVLESMRAVEQHEE
CCCCCCCCCCCCHHCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALFARLLDGLRGIDAVTLYGDPERRTPTAFFSVAGRADQEVYERLAAAGVNAPASSFYAI
HHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEE
EASRWIGLGDTGAVRAGLAPYSSADDVERLLAGVAEIAG
ECCCEECCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TFDVDRIRKDFPALDSGTAYFDGPGGSQVPRQVAEAVAGTMTSGISNRGQVTAAEQRAE
CCCHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHH
DVVVGARAAVADLLGCDPGGVVFARSMTQATYDVSRALAKEWGPGDEVVVTRLDHDGNIR
HHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
PWVQAAQAAGATVRWAGFDQETGELGVDDVREQLSARTKLVAVTGASNVLGTRPDVPAIA
HHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHH
AAVHEVGALLYVDGVHLTPHVPVDVAAIGADFYACSPYKFLGPHHGIVVAAPELLERIHP
HHHHHHCEEEEECCEEECCCCCEEHHHHCCCCEECCCHHHCCCCCCEEEECHHHHHHCCC
DKLVPAGDQVPERFELGTLPYELLAGTTAAVDYLAGLASDAADRRTRVLESMRAVEQHEE
CCCCCCCCCCCCHHCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALFARLLDGLRGIDAVTLYGDPERRTPTAFFSVAGRADQEVYERLAAAGVNAPASSFYAI
HHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEE
EASRWIGLGDTGAVRAGLAPYSSADDVERLLAGVAEIAG
ECCCEECCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]