| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119717655
Identifier: 119717655
GI number: 119717655
Start: 3637244
End: 3638887
Strand: Reverse
Name: 119717655
Synonym: Noca_3433
Alternate gene names: NA
Gene position: 3638887-3637244 (Counterclockwise)
Preceding gene: 119717656
Following gene: 119717654
Centisome position: 72.98
GC content: 74.03
Gene sequence:
>1644_bases ATGCAGCACCTCCTGCGTCGGACGGCTGCCGCCTTGGCGGTCCCGGCACTCTCTCTCACCGCGCTGACGGCGATCTCGTC GCCGGCGCACGCCGCCATCGACGCCGGCCCGGCGAGCGACGCCGGCACCTGGCTGGTCGGCAAGCTCCAGGCCACCGGCT GGATCGCCCACAACCAGCAGTACGACTTCGACGACTACGGCCTCACGATCGACGCCGGCCTGGCGCTTGACAGCGTGGGC GCACCGGCCTCGGTCGTCGACAGCATCAGCGACGCGATCGCCGGCCACATCGACGCCTACGTCGCGCCCGGCTACGGAAC GAACCTCTCGGCCGGAGGGACCGCGAAGGCGCTGGTCCTCGCCCAGGCCGCGGGCGACGACCCCGGGTCGTACGGCGGGC GCGACCTCGTCACCGACCTCGAGGGTCGGGTGTCGGCCGCCGGCGCGAACACCGGCCGGATCCAGGACGACTGGGACCCG AGCGTCCAGTACGCCGCCGACTACGCGAACGTGCTCGGCCAGGCGTTCGCCGCCCAGGGCCTGGACGCCGCGGCCAGCAC GAAGACCGACGCGGTCACCGACTTCCTGCTCGCCCAGCAGTGCTCGGCGGGCTACTTCCGTCAGGACTTCGCCGACGTCG GTGCCGCCGACCAGACGTGCGACGGCGGCAGCGGGAAGCCGAGCGTCGATGCCACGGCGCTCGCGATCCAGGCGCTCCAG GGCCAGCTCGACGACACCGACGTGGCCGCGCACGTCGCCGATGCCGTCGCGTGGCTCGTGGCGCACCAGAAGGCCAACGG CGGCTTCGGCTCGAGCGCCGACATCGCGACGGTCAACGCCAACAGCACGGGCGGGGCGGCGAGCGCGCTGCTGGTCTCCG GCGAGACCGCCGCCGCCGTCAAGGCCGCGGCCTGGCTGCGTGCGCACCAGGTGACGAACGTCGCCAACTGCGTGTACTAC GACGCCGCCGACGCCGGCGCGGTCCTGTACGACAACGCGGCTCGCAAGGCCGCCCAGGGCGGCCCGATGGATGCGGCGCT CGGTGACCAGTCACTACGCGCGACCACCCAGGCGCTGACCGGCCTGGCCGCCGCCCAGACCGGTCCGGGCGCGCCCAACG TCCTCTACGCGCCCGGCTACGTGAAGGCCGGCGGCACCACCGCGGTCGGCGTGACCGACGCGGCGCCCGGCGAGGCGCTG TGCGCGATGCTCGGCGAGCAGTCGGTCCTCGGGTGGGCGAACCCGCTCGGCGAGGGCCTGCTGAAGCTCCGGGTCCCCGC GCAGGCCGGCAGGAGCACCGTCACGGTCGCCAACTCCGGCGGCGAGATCGGCGACGCGCGGATCCACGCGCTCGGCGCGA AGACCCTGAAGGTCGCGCTGCGGAGCAAGCGGGTCGCGACCGGTGACCGGCAGGTCGTCAAGGTCCGCGGGCTCGCCCCC GGCGAGCTGGCAAGGGTCGCGATCACCTGGCCATCCGGCAAGCGCAGCGCTTCCGGCGCGGCGACGGCCGGCCAGGCCGA CCGGAACGGTGTGTTCCGCGTCGCGTTCCGCGCGCCCGAGAAGCAGGTCGGGACCGCGACCGTGAAGGCCCGAGGCGAGT TCAAGGACCGCAAGGGTCAGGCCTCCTTCACCGTCACCCGCTGA
Upstream 100 bases:
>100_bases CGATGCGACGCGTCCTGATCACACGCTGTCGAGGAAAGCAGCGGGTGGCCTCCGGGACCTACCCCGATCGCCTCCCGCTG CCGCAGCGGGAAGGAACACC
Downstream 100 bases:
>100_bases CGTGGGCGTGCTGTCTCGGATCGTCGCCGCGGCCACCCTGGCCGCGGCGGCGTACGCCGGCCTCCCCGCCGCCCCCGTGG CCGCGGCCGGCTGCTCCTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 547; Mature: 547
Protein sequence:
>547_residues MQHLLRRTAAALAVPALSLTALTAISSPAHAAIDAGPASDAGTWLVGKLQATGWIAHNQQYDFDDYGLTIDAGLALDSVG APASVVDSISDAIAGHIDAYVAPGYGTNLSAGGTAKALVLAQAAGDDPGSYGGRDLVTDLEGRVSAAGANTGRIQDDWDP SVQYAADYANVLGQAFAAQGLDAAASTKTDAVTDFLLAQQCSAGYFRQDFADVGAADQTCDGGSGKPSVDATALAIQALQ GQLDDTDVAAHVADAVAWLVAHQKANGGFGSSADIATVNANSTGGAASALLVSGETAAAVKAAAWLRAHQVTNVANCVYY DAADAGAVLYDNAARKAAQGGPMDAALGDQSLRATTQALTGLAAAQTGPGAPNVLYAPGYVKAGGTTAVGVTDAAPGEAL CAMLGEQSVLGWANPLGEGLLKLRVPAQAGRSTVTVANSGGEIGDARIHALGAKTLKVALRSKRVATGDRQVVKVRGLAP GELARVAITWPSGKRSASGAATAGQADRNGVFRVAFRAPEKQVGTATVKARGEFKDRKGQASFTVTR
Sequences:
>Translated_547_residues MQHLLRRTAAALAVPALSLTALTAISSPAHAAIDAGPASDAGTWLVGKLQATGWIAHNQQYDFDDYGLTIDAGLALDSVG APASVVDSISDAIAGHIDAYVAPGYGTNLSAGGTAKALVLAQAAGDDPGSYGGRDLVTDLEGRVSAAGANTGRIQDDWDP SVQYAADYANVLGQAFAAQGLDAAASTKTDAVTDFLLAQQCSAGYFRQDFADVGAADQTCDGGSGKPSVDATALAIQALQ GQLDDTDVAAHVADAVAWLVAHQKANGGFGSSADIATVNANSTGGAASALLVSGETAAAVKAAAWLRAHQVTNVANCVYY DAADAGAVLYDNAARKAAQGGPMDAALGDQSLRATTQALTGLAAAQTGPGAPNVLYAPGYVKAGGTTAVGVTDAAPGEAL CAMLGEQSVLGWANPLGEGLLKLRVPAQAGRSTVTVANSGGEIGDARIHALGAKTLKVALRSKRVATGDRQVVKVRGLAP GELARVAITWPSGKRSASGAATAGQADRNGVFRVAFRAPEKQVGTATVKARGEFKDRKGQASFTVTR >Mature_547_residues MQHLLRRTAAALAVPALSLTALTAISSPAHAAIDAGPASDAGTWLVGKLQATGWIAHNQQYDFDDYGLTIDAGLALDSVG APASVVDSISDAIAGHIDAYVAPGYGTNLSAGGTAKALVLAQAAGDDPGSYGGRDLVTDLEGRVSAAGANTGRIQDDWDP SVQYAADYANVLGQAFAAQGLDAAASTKTDAVTDFLLAQQCSAGYFRQDFADVGAADQTCDGGSGKPSVDATALAIQALQ GQLDDTDVAAHVADAVAWLVAHQKANGGFGSSADIATVNANSTGGAASALLVSGETAAAVKAAAWLRAHQVTNVANCVYY DAADAGAVLYDNAARKAAQGGPMDAALGDQSLRATTQALTGLAAAQTGPGAPNVLYAPGYVKAGGTTAVGVTDAAPGEAL CAMLGEQSVLGWANPLGEGLLKLRVPAQAGRSTVTVANSGGEIGDARIHALGAKTLKVALRSKRVATGDRQVVKVRGLAP GELARVAITWPSGKRSASGAATAGQADRNGVFRVAFRAPEKQVGTATVKARGEFKDRKGQASFTVTR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54933; Mature: 54933
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQHLLRRTAAALAVPALSLTALTAISSPAHAAIDAGPASDAGTWLVGKLQATGWIAHNQQ CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEEEEEECEEEECCCC YDFDDYGLTIDAGLALDSVGAPASVVDSISDAIAGHIDAYVAPGYGTNLSAGGTAKALVL CCCCCCCEEEECCCEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEE AQAAGDDPGSYGGRDLVTDLEGRVSAAGANTGRIQDDWDPSVQYAADYANVLGQAFAAQG EECCCCCCCCCCCCHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC LDAAASTKTDAVTDFLLAQQCSAGYFRQDFADVGAADQTCDGGSGKPSVDATALAIQALQ CCHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH GQLDDTDVAAHVADAVAWLVAHQKANGGFGSSADIATVNANSTGGAASALLVSGETAAAV CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCHHHHH KAAAWLRAHQVTNVANCVYYDAADAGAVLYDNAARKAAQGGPMDAALGDQSLRATTQALT HHHHHHHHHHHHHHHHEEEEECCCCCEEEECCHHHHHHCCCCCCHHCCCHHHHHHHHHHH GLAAAQTGPGAPNVLYAPGYVKAGGTTAVGVTDAAPGEALCAMLGEQSVLGWANPLGEGL HHHHHCCCCCCCCEEECCCEEECCCCEEEECCCCCCHHHHHHHHCCCCHHCCCCHHCCCE LKLRVPAQAGRSTVTVANSGGEIGDARIHALGAKTLKVALRSKRVATGDRQVVKVRGLAP EEEECCHHCCCCEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCCC GELARVAITWPSGKRSASGAATAGQADRNGVFRVAFRAPEKQVGTATVKARGEFKDRKGQ CCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCC ASFTVTR CCEEEEC >Mature Secondary Structure MQHLLRRTAAALAVPALSLTALTAISSPAHAAIDAGPASDAGTWLVGKLQATGWIAHNQQ CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEEEEEECEEEECCCC YDFDDYGLTIDAGLALDSVGAPASVVDSISDAIAGHIDAYVAPGYGTNLSAGGTAKALVL CCCCCCCEEEECCCEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEE AQAAGDDPGSYGGRDLVTDLEGRVSAAGANTGRIQDDWDPSVQYAADYANVLGQAFAAQG EECCCCCCCCCCCCHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC LDAAASTKTDAVTDFLLAQQCSAGYFRQDFADVGAADQTCDGGSGKPSVDATALAIQALQ CCHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH GQLDDTDVAAHVADAVAWLVAHQKANGGFGSSADIATVNANSTGGAASALLVSGETAAAV CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCHHHHH KAAAWLRAHQVTNVANCVYYDAADAGAVLYDNAARKAAQGGPMDAALGDQSLRATTQALT HHHHHHHHHHHHHHHHEEEEECCCCCEEEECCHHHHHHCCCCCCHHCCCHHHHHHHHHHH GLAAAQTGPGAPNVLYAPGYVKAGGTTAVGVTDAAPGEALCAMLGEQSVLGWANPLGEGL HHHHHCCCCCCCCEEECCCEEECCCCEEEECCCCCCHHHHHHHHCCCCHHCCCCHHCCCE LKLRVPAQAGRSTVTVANSGGEIGDARIHALGAKTLKVALRSKRVATGDRQVVKVRGLAP EEEECCHHCCCCEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCCC GELARVAITWPSGKRSASGAATAGQADRNGVFRVAFRAPEKQVGTATVKARGEFKDRKGQ CCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCC ASFTVTR CCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA