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The map label for this gene is ycgM [C]

Identifier: 119717561

GI number: 119717561

Start: 3542411

End: 3543220

Strand: Reverse

Name: ycgM [C]

Synonym: Noca_3337

Alternate gene names: 119717561

Gene position: 3543220-3542411 (Counterclockwise)

Preceding gene: 119717562

Following gene: 119717560

Centisome position: 71.07

GC content: 69.01

Gene sequence:

>810_bases
GTGCGCATCGCAAGGTTCACCACGGGCGAAGACCCGTTGTACGGCGTGGTCACGGGCGAGCTCGACGAGTTCGGGCAGCC
GGACCCCGACAGCGTCGTCGTGGCCCTGGCCGGCGACCCGCTCTACGTCGGCGTCAAGCTGCTCGACCAGGAGCACCGGC
TCGAGGACGTGCGACTGCTCGCGCCGGTGCTGCCGCGCAGCAAGGTCGTCGGGATCGGCCGCAACTACGCGGCGCACGCG
GCGGAGCTGGGCAACGACCTACCCACCGAGCCGCTGATGTTCCTCAAGCCGAACACCAGCGTGATCGGCCCGGGCGACCC
GATCTTCTACCCGCCGCAGACGCAGAACCTGCACTACGAGGGCGAGCTCGCCGTCGTGATCGGCCGGATCTGCCGCGACG
TACCTCCCGAGCAGGCCACCGACGTGATCCACGGCTACACGATCGGCAACGACGTGACCGCGCGGGACCTGCAGCGCAGC
GACGTGCAGTTCACCCGGGCCAAGGGCTTCGACTCGTTCTGCCCGCTGGGGCCGTGGATCGAGACCGACCTCGACCCGCA
CGACTTCGCGGAGGGCCGCAGCGTCCAGACGCACCTGAACGGCGACCTGGTCCAGGACGGCTCGACCAAGGACCTGATCT
TCGACATCCCGACCCTGATCGCGTACGTGTCCAGCGTGATGACGCTGCTCCCCGGTGACGTCATCCTCACCGGCACCCCC
GAGGGCGTCGGCCCCATGGACGTCGGCGACGAGGTCGAGGTCTCGATCGCCGGACTCGGCACTCTCACGAACCCCGTCAA
GGCAAGGTGA

Upstream 100 bases:

>100_bases
GGTGCGCTTCCCGTGGACCGCCGCGCAGATCCGCGACCAGCTCGTGGAGGTCGTGCACCTGGCGCCCTGAGCCCGCGCGC
CCGCTCGGTAGGCTCCCCTA

Downstream 100 bases:

>100_bases
CCCAGCGGTGAACAACCAGCCGAAGACCGTTCGCGTCCGGATGGCGCCCAGCCCGACCGGGAGCCCGCACGTCGGCCTGG
TCCGCACCGCGCTCTTCAAC

Product: 5-carboxymethyl-2-hydroxymuconate delta-isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MRIARFTTGEDPLYGVVTGELDEFGQPDPDSVVVALAGDPLYVGVKLLDQEHRLEDVRLLAPVLPRSKVVGIGRNYAAHA
AELGNDLPTEPLMFLKPNTSVIGPGDPIFYPPQTQNLHYEGELAVVIGRICRDVPPEQATDVIHGYTIGNDVTARDLQRS
DVQFTRAKGFDSFCPLGPWIETDLDPHDFAEGRSVQTHLNGDLVQDGSTKDLIFDIPTLIAYVSSVMTLLPGDVILTGTP
EGVGPMDVGDEVEVSIAGLGTLTNPVKAR

Sequences:

>Translated_269_residues
MRIARFTTGEDPLYGVVTGELDEFGQPDPDSVVVALAGDPLYVGVKLLDQEHRLEDVRLLAPVLPRSKVVGIGRNYAAHA
AELGNDLPTEPLMFLKPNTSVIGPGDPIFYPPQTQNLHYEGELAVVIGRICRDVPPEQATDVIHGYTIGNDVTARDLQRS
DVQFTRAKGFDSFCPLGPWIETDLDPHDFAEGRSVQTHLNGDLVQDGSTKDLIFDIPTLIAYVSSVMTLLPGDVILTGTP
EGVGPMDVGDEVEVSIAGLGTLTNPVKAR
>Mature_269_residues
MRIARFTTGEDPLYGVVTGELDEFGQPDPDSVVVALAGDPLYVGVKLLDQEHRLEDVRLLAPVLPRSKVVGIGRNYAAHA
AELGNDLPTEPLMFLKPNTSVIGPGDPIFYPPQTQNLHYEGELAVVIGRICRDVPPEQATDVIHGYTIGNDVTARDLQRS
DVQFTRAKGFDSFCPLGPWIETDLDPHDFAEGRSVQTHLNGDLVQDGSTKDLIFDIPTLIAYVSSVMTLLPGDVILTGTP
EGVGPMDVGDEVEVSIAGLGTLTNPVKAR

Specific function: Unknown

COG id: COG0179

COG function: function code Q; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAH family [H]

Homologues:

Organism=Homo sapiens, GI13654274, Length=205, Percent_Identity=43.4146341463415, Blast_Score=172, Evalue=2e-43,
Organism=Homo sapiens, GI215422413, Length=202, Percent_Identity=43.0693069306931, Blast_Score=171, Evalue=9e-43,
Organism=Homo sapiens, GI66348062, Length=197, Percent_Identity=44.1624365482233, Blast_Score=170, Evalue=1e-42,
Organism=Homo sapiens, GI156231349, Length=224, Percent_Identity=41.5178571428571, Blast_Score=166, Evalue=2e-41,
Organism=Homo sapiens, GI40786394, Length=224, Percent_Identity=40.625, Blast_Score=162, Evalue=3e-40,
Organism=Escherichia coli, GI1787428, Length=216, Percent_Identity=40.7407407407407, Blast_Score=149, Evalue=3e-37,
Organism=Caenorhabditis elegans, GI17557057, Length=196, Percent_Identity=42.3469387755102, Blast_Score=148, Evalue=3e-36,
Organism=Saccharomyces cerevisiae, GI6324161, Length=228, Percent_Identity=32.4561403508772, Blast_Score=123, Evalue=3e-29,
Organism=Drosophila melanogaster, GI28572127, Length=254, Percent_Identity=38.1889763779528, Blast_Score=156, Evalue=1e-38,
Organism=Drosophila melanogaster, GI28571789, Length=209, Percent_Identity=38.755980861244, Blast_Score=135, Evalue=3e-32,
Organism=Drosophila melanogaster, GI24663695, Length=239, Percent_Identity=35.1464435146443, Blast_Score=127, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002529
- InterPro:   IPR011234 [H]

Pfam domain/function: PF01557 FAA_hydrolase [H]

EC number: NA

Molecular weight: Translated: 29022; Mature: 29022

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIARFTTGEDPLYGVVTGELDEFGQPDPDSVVVALAGDPLYVGVKLLDQEHRLEDVRLL
CEEEEECCCCCCEEEEEECCHHHCCCCCCCCEEEEEECCCEEEEEEEECCHHHHHHHHHH
APVLPRSKVVGIGRNYAAHAAELGNDLPTEPLMFLKPNTSVIGPGDPIFYPPQTQNLHYE
HHCCCCCEEEECCCCHHHHHHHHCCCCCCCCEEEECCCCCEECCCCCEEECCCCCCEEEC
GELAVVIGRICRDVPPEQATDVIHGYTIGNDVTARDLQRSDVQFTRAKGFDSFCPLGPWI
CHHHHHHHHHHHCCCCHHHHHEEEEEECCCCCCHHHHHHCCCEEHHHCCCCCCCCCCCCC
ETDLDPHDFAEGRSVQTHLNGDLVQDGSTKDLIFDIPTLIAYVSSVMTLLPGDVILTGTP
CCCCCHHHHCCCCEEEEECCCCEECCCCCCCEEEHHHHHHHHHHHHHHHCCCCEEEECCC
EGVGPMDVGDEVEVSIAGLGTLTNPVKAR
CCCCCCCCCCCEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MRIARFTTGEDPLYGVVTGELDEFGQPDPDSVVVALAGDPLYVGVKLLDQEHRLEDVRLL
CEEEEECCCCCCEEEEEECCHHHCCCCCCCCEEEEEECCCEEEEEEEECCHHHHHHHHHH
APVLPRSKVVGIGRNYAAHAAELGNDLPTEPLMFLKPNTSVIGPGDPIFYPPQTQNLHYE
HHCCCCCEEEECCCCHHHHHHHHCCCCCCCCEEEECCCCCEECCCCCEEECCCCCCEEEC
GELAVVIGRICRDVPPEQATDVIHGYTIGNDVTARDLQRSDVQFTRAKGFDSFCPLGPWI
CHHHHHHHHHHHCCCCHHHHHEEEEEECCCCCCHHHHHHCCCEEHHHCCCCCCCCCCCCC
ETDLDPHDFAEGRSVQTHLNGDLVQDGSTKDLIFDIPTLIAYVSSVMTLLPGDVILTGTP
CCCCCHHHHCCCCEEEEECCCCEECCCCCCCEEEHHHHHHHHHHHHHHHCCCCEEEECCC
EGVGPMDVGDEVEVSIAGLGTLTNPVKAR
CCCCCCCCCCCEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]