Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 119717541

GI number: 119717541

Start: 3524593

End: 3525687

Strand: Reverse

Name: rbsC [H]

Synonym: Noca_3317

Alternate gene names: 119717541

Gene position: 3525687-3524593 (Counterclockwise)

Preceding gene: 119717542

Following gene: 119717540

Centisome position: 70.71

GC content: 67.31

Gene sequence:

>1095_bases
GTGAACCAGAATCTGCGCGACTCGATGTCCGAGCTCAACGAGCGGGCGGGCGCTGCATGGTCGGCGGCGCTTGTCCGGAT
CCATGTCTCGCGCGGCGTCGGCCGGATGGCGCTGCTGCTCGTGGCCACGTTTGCCGTGTTCGCCTTCTTGCGGCCCGGAA
TCTTCCTCAACTCGGTCAACCTCACCAACATCGCCATCGGCACTCCGGAGATCGGGCTGCTCGCCCTCGCCGTGATGATC
GCGATGCTGACCGGTGGGATCGATCTGTCGGTAGTGGCTATCGCCAACGGCACGGCCATCACCGTCTCCTCGCTCTACAC
CGCGATCGCGGAGGCGCAGGGCTCGTCGGCCGCGGAGTCGATGACGCCCCTGATCCTGCTCGTCGGGCTCGCCGTGGGTC
TGGTGCTGGGGACCGTCAACGGGCTGCTGATCAGCATCGCGCGGATCACGCCGATCCTGGTCACGCTCGGCACCATGCAG
CTCTTCAACGGCCTGGCGCTCGTGTGGACCGGAGGCGTCACCATCTCCGGAGCGCCGTCGGCGCTCCGGACGGTCGGACG
AACGGCCGTCCTCGGGGTGCCCGTGCTGCTGGTCATCCTGCTCGCCGCAGCGGCACTGCTCGCGGTGCTGATCAACCGCA
CCCCGATCGGGCGGAAGATCCAGCTCGAGGGCGCAAACCCGGTGGCGGCACGCTACTCCGGCATCAGCGACCGGACCACG
CTGATGATGACCTACGTCATCAGCGGCCTGCTCTCCTCGATCGCAGGTCTGCTGTTCCTGAGCCGGAACCCGTCCGCCAG
CGCTGACTACGGATCGAGCTACGTCCTCCTCGTCATCGTCATCGTCGTCCTCGGTGGGACCAACCCGATGGGCGGCTTCG
CGACCGTGCTCGGCGTCGTGCTCGCCACGCTGACCCTTCAGGTGGTGTCGAGCGGCTTCACCGCCCTGCGGCTCTCCGCC
TACGAGTACGCCATCGCCCAAGGGGTCATCCTCATCGGCGTCATGGTGCTCGACCAGTTCAGCTTCAGGAAGCCGAGCCG
ACCCGTGCCCGTCGTGACCGACCCGCAACCATCCTCCACAGCGCCCGACAAGTGA

Upstream 100 bases:

>100_bases
CGGTCGGCGTGCTCCTGCTGCTCGGAGTCAGCGTGCAGGCTCTCGGCGCGAGCCGTGGTCGTCGGCGACCGGTCGTGGTT
GCACCGAAGGAGGCCGCCAC

Downstream 100 bases:

>100_bases
ACGGACCGAATGCCATGCGGAAGATCATCAACGCCCCGGAGAACTTCGTCGACGAGTTCGTCGAGGGGATCCTGCTGGCC
CATCCGGACCTGGTGAAGAC

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MNQNLRDSMSELNERAGAAWSAALVRIHVSRGVGRMALLLVATFAVFAFLRPGIFLNSVNLTNIAIGTPEIGLLALAVMI
AMLTGGIDLSVVAIANGTAITVSSLYTAIAEAQGSSAAESMTPLILLVGLAVGLVLGTVNGLLISIARITPILVTLGTMQ
LFNGLALVWTGGVTISGAPSALRTVGRTAVLGVPVLLVILLAAAALLAVLINRTPIGRKIQLEGANPVAARYSGISDRTT
LMMTYVISGLLSSIAGLLFLSRNPSASADYGSSYVLLVIVIVVLGGTNPMGGFATVLGVVLATLTLQVVSSGFTALRLSA
YEYAIAQGVILIGVMVLDQFSFRKPSRPVPVVTDPQPSSTAPDK

Sequences:

>Translated_364_residues
MNQNLRDSMSELNERAGAAWSAALVRIHVSRGVGRMALLLVATFAVFAFLRPGIFLNSVNLTNIAIGTPEIGLLALAVMI
AMLTGGIDLSVVAIANGTAITVSSLYTAIAEAQGSSAAESMTPLILLVGLAVGLVLGTVNGLLISIARITPILVTLGTMQ
LFNGLALVWTGGVTISGAPSALRTVGRTAVLGVPVLLVILLAAAALLAVLINRTPIGRKIQLEGANPVAARYSGISDRTT
LMMTYVISGLLSSIAGLLFLSRNPSASADYGSSYVLLVIVIVVLGGTNPMGGFATVLGVVLATLTLQVVSSGFTALRLSA
YEYAIAQGVILIGVMVLDQFSFRKPSRPVPVVTDPQPSSTAPDK
>Mature_364_residues
MNQNLRDSMSELNERAGAAWSAALVRIHVSRGVGRMALLLVATFAVFAFLRPGIFLNSVNLTNIAIGTPEIGLLALAVMI
AMLTGGIDLSVVAIANGTAITVSSLYTAIAEAQGSSAAESMTPLILLVGLAVGLVLGTVNGLLISIARITPILVTLGTMQ
LFNGLALVWTGGVTISGAPSALRTVGRTAVLGVPVLLVILLAAAALLAVLINRTPIGRKIQLEGANPVAARYSGISDRTT
LMMTYVISGLLSSIAGLLFLSRNPSASADYGSSYVLLVIVIVVLGGTNPMGGFATVLGVVLATLTLQVVSSGFTALRLSA
YEYAIAQGVILIGVMVLDQFSFRKPSRPVPVVTDPQPSSTAPDK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790524, Length=297, Percent_Identity=28.956228956229, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787794, Length=296, Percent_Identity=30.7432432432432, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI145693152, Length=299, Percent_Identity=28.0936454849498, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787793, Length=266, Percent_Identity=30.4511278195489, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1788471, Length=283, Percent_Identity=31.8021201413428, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1790191, Length=308, Percent_Identity=29.5454545454545, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788896, Length=310, Percent_Identity=26.1290322580645, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI145693214, Length=243, Percent_Identity=31.6872427983539, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789992, Length=366, Percent_Identity=24.8633879781421, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI87082395, Length=319, Percent_Identity=27.5862068965517, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 37478; Mature: 37478

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQNLRDSMSELNERAGAAWSAALVRIHVSRGVGRMALLLVATFAVFAFLRPGIFLNSVN
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEECCC
LTNIAIGTPEIGLLALAVMIAMLTGGIDLSVVAIANGTAITVSSLYTAIAEAQGSSAAES
EEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEHHHHHHHHHHHHCCCCHHHH
MTPLILLVGLAVGLVLGTVNGLLISIARITPILVTLGTMQLFNGLALVWTGGVTISGAPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEECCCCH
ALRTVGRTAVLGVPVLLVILLAAAALLAVLINRTPIGRKIQLEGANPVAARYSGISDRTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHCCCCHHHH
LMMTYVISGLLSSIAGLLFLSRNPSASADYGSSYVLLVIVIVVLGGTNPMGGFATVLGVV
HHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
LATLTLQVVSSGFTALRLSAYEYAIAQGVILIGVMVLDQFSFRKPSRPVPVVTDPQPSST
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCC
APDK
CCCC
>Mature Secondary Structure
MNQNLRDSMSELNERAGAAWSAALVRIHVSRGVGRMALLLVATFAVFAFLRPGIFLNSVN
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEECCC
LTNIAIGTPEIGLLALAVMIAMLTGGIDLSVVAIANGTAITVSSLYTAIAEAQGSSAAES
EEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEHHHHHHHHHHHHCCCCHHHH
MTPLILLVGLAVGLVLGTVNGLLISIARITPILVTLGTMQLFNGLALVWTGGVTISGAPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEECCCCH
ALRTVGRTAVLGVPVLLVILLAAAALLAVLINRTPIGRKIQLEGANPVAARYSGISDRTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHCCCCHHHH
LMMTYVISGLLSSIAGLLFLSRNPSASADYGSSYVLLVIVIVVLGGTNPMGGFATVLGVV
HHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
LATLTLQVVSSGFTALRLSAYEYAIAQGVILIGVMVLDQFSFRKPSRPVPVVTDPQPSST
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCC
APDK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]