Click here to switch to the map view.

The map label for this gene is rsmD [H]

Identifier: 119717508

GI number: 119717508

Start: 3490639

End: 3491235

Strand: Reverse

Name: rsmD [H]

Synonym: Noca_3284

Alternate gene names: 119717508

Gene position: 3491235-3490639 (Counterclockwise)

Preceding gene: 119717509

Following gene: 119717507

Centisome position: 70.02

GC content: 78.06

Gene sequence:

>597_bases
GTGACCCGGATCATCGGAGGCCGGGCAGGCGGCCGCCGGATCAACACGCCCCGGGGGGCCGCCACCCGGCCGACCAGCGA
CCGGGTGCGCGAGGCGCTGTTCTCCGCGATCGAGTCGTGGTGCGGCTCGCTGCACGGGCTCCGCGTCCTCGACCTGTACG
CCGGGTCCGGGGCGGTCGGCCTGGAGGCGTGGTCGCGCGGCGCCGAGGCCGTCACCCTGGTGGAGTCCGACCGCCGCACC
GCCGCCCTCGTCTCGGACAACGCCCGCACGCTCGGGTTCGCCGGCGCGGACGTCGTGGCCGCGTCGGTCGCCACGGTGCT
GGCCCGGGGCGCGGCGGCGCCGTACGACGTCGTGTTCCTGGACCCGCCCTATCCCCTCGAGGACGCCGCCCTCGGCGGCG
ACCTCGCGCTGCTGGTCGCGCACGGCTGGCTGGCCGCCGGGGCGCTGGTGGTCGTCGAGCGGTCCTCGCGGAGCCCGGAG
CCGAGCTGGCCGGCCGGCCTGTCCGGCACCCGCCACAAGCGCTACGGCGAGACGACGCTCTGGTACGCCCAGGAGGGCCG
GCCGCCGGATCAGCCGACGGCGGCCGGGAGGCGGTAG

Upstream 100 bases:

>100_bases
GCCGATCCCGATCTCGCGGGCACGGCCGACCTGGCGGCCGCGGTGGCCGCGATGGAGGAGTCCGTGCAGTCCGACTTCAT
CGAGCGGTCGTGAGCGCCCC

Downstream 100 bases:

>100_bases
CCTCCCGCCATGACCCGCGCGGTGTGCCCCGGTTCGTTCGACCCGGTGACCAACGGTCATCTCGACATCGTCCGGCGGGC
GGCCGCGATCTTCGACGAGC

Product: putative methyltransferase

Products: NA

Alternate protein names: 16S rRNA m2G966 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase [H]

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MTRIIGGRAGGRRINTPRGAATRPTSDRVREALFSAIESWCGSLHGLRVLDLYAGSGAVGLEAWSRGAEAVTLVESDRRT
AALVSDNARTLGFAGADVVAASVATVLARGAAAPYDVVFLDPPYPLEDAALGGDLALLVAHGWLAAGALVVVERSSRSPE
PSWPAGLSGTRHKRYGETTLWYAQEGRPPDQPTAAGRR

Sequences:

>Translated_198_residues
MTRIIGGRAGGRRINTPRGAATRPTSDRVREALFSAIESWCGSLHGLRVLDLYAGSGAVGLEAWSRGAEAVTLVESDRRT
AALVSDNARTLGFAGADVVAASVATVLARGAAAPYDVVFLDPPYPLEDAALGGDLALLVAHGWLAAGALVVVERSSRSPE
PSWPAGLSGTRHKRYGETTLWYAQEGRPPDQPTAAGRR
>Mature_197_residues
TRIIGGRAGGRRINTPRGAATRPTSDRVREALFSAIESWCGSLHGLRVLDLYAGSGAVGLEAWSRGAEAVTLVESDRRTA
ALVSDNARTLGFAGADVVAASVATVLARGAAAPYDVVFLDPPYPLEDAALGGDLALLVAHGWLAAGALVVVERSSRSPEP
SWPAGLSGTRHKRYGETTLWYAQEGRPPDQPTAAGRR

Specific function: Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=177, Percent_Identity=39.5480225988701, Blast_Score=107, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: =2.1.1.171 [H]

Molecular weight: Translated: 20745; Mature: 20613

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRIIGGRAGGRRINTPRGAATRPTSDRVREALFSAIESWCGSLHGLRVLDLYAGSGAVG
CCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
LEAWSRGAEAVTLVESDRRTAALVSDNARTLGFAGADVVAASVATVLARGAAAPYDVVFL
HHHHHCCCCEEEEEECCCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHCCCCCEEEEEE
DPPYPLEDAALGGDLALLVAHGWLAAGALVVVERSSRSPEPSWPAGLSGTRHKRYGETTL
CCCCCCCCHHCCCCHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
WYAQEGRPPDQPTAAGRR
EEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
TRIIGGRAGGRRINTPRGAATRPTSDRVREALFSAIESWCGSLHGLRVLDLYAGSGAVG
CEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
LEAWSRGAEAVTLVESDRRTAALVSDNARTLGFAGADVVAASVATVLARGAAAPYDVVFL
HHHHHCCCCEEEEEECCCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHCCCCCEEEEEE
DPPYPLEDAALGGDLALLVAHGWLAAGALVVVERSSRSPEPSWPAGLSGTRHKRYGETTL
CCCCCCCCHHCCCCHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
WYAQEGRPPDQPTAAGRR
EEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]