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The map label for this gene is 119717483

Identifier: 119717483

GI number: 119717483

Start: 3459634

End: 3459876

Strand: Reverse

Name: 119717483

Synonym: Noca_3259

Alternate gene names: NA

Gene position: 3459876-3459634 (Counterclockwise)

Preceding gene: 119717484

Following gene: 119717482

Centisome position: 69.39

GC content: 72.84

Gene sequence:

>243_bases
ATGCTCGCCGAGGCGCTCGAGCACCTGGTGCGCGGCGTCGTCGACCACCCCGACGACGTGAGCGTCCGGGACAAGCAGCT
GCGTCGCGGCTCCATCCTCGAGGTCCGGGTGCACCCCGATGACCTCGGGAAGGTCATCGGCCGCAGCGGCCGCACGGCCA
CGGCGTTCCGCACGGTGATCTCCGCGCTCGCCGGCCGCGGCGGGGCCCGCATCGACTTCGTCGACGTGGACCGTCGTCGA
TAG

Upstream 100 bases:

>100_bases
CCGCTCCGGTGCCCGCCGATGAGACCCCCGAGGTCGCGGCCGAGGCGGCCGAGGCCGCCGAGGGCACCGGCGACACGGGC
AAGGCGGAGTCCTGAGCGCC

Downstream 100 bases:

>100_bases
CGGTACGAGCCACGCGAGCACGTACGGGCGCCGTCCCCACGGGGGCGGCGCCCGTTCCGCGTCTCCGGGGCCGGGTCTCG
TCCCGCGGTTGCGTCCGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 80

Protein sequence:

>80_residues
MLAEALEHLVRGVVDHPDDVSVRDKQLRRGSILEVRVHPDDLGKVIGRSGRTATAFRTVISALAGRGGARIDFVDVDRRR

Sequences:

>Translated_80_residues
MLAEALEHLVRGVVDHPDDVSVRDKQLRRGSILEVRVHPDDLGKVIGRSGRTATAFRTVISALAGRGGARIDFVDVDRRR
>Mature_80_residues
MLAEALEHLVRGVVDHPDDVSVRDKQLRRGSILEVRVHPDDLGKVIGRSGRTATAFRTVISALAGRGGARIDFVDVDRRR

Specific function: Unknown

COG id: COG1837

COG function: function code R; Predicted RNA-binding protein (contains KH domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR009019
- InterPro:   IPR004088
- InterPro:   IPR018111
- InterPro:   IPR020627 [H]

Pfam domain/function: PF00013 KH_1 [H]

EC number: NA

Molecular weight: Translated: 8828; Mature: 8828

Theoretical pI: Translated: 11.18; Mature: 11.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAEALEHLVRGVVDHPDDVSVRDKQLRRGSILEVRVHPDDLGKVIGRSGRTATAFRTVI
CHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEEECHHHHHHHHCCCCCHHHHHHHHH
SALAGRGGARIDFVDVDRRR
HHHHCCCCCEEEEECCCCCC
>Mature Secondary Structure
MLAEALEHLVRGVVDHPDDVSVRDKQLRRGSILEVRVHPDDLGKVIGRSGRTATAFRTVI
CHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEEECHHHHHHHHCCCCCHHHHHHHHH
SALAGRGGARIDFVDVDRRR
HHHHCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]