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The map label for this gene is cspA [H]

Identifier: 119717093

GI number: 119717093

Start: 3049136

End: 3049339

Strand: Reverse

Name: cspA [H]

Synonym: Noca_2869

Alternate gene names: 119717093

Gene position: 3049339-3049136 (Counterclockwise)

Preceding gene: 119717094

Following gene: 119717091

Centisome position: 61.16

GC content: 66.67

Gene sequence:

>204_bases
ATGGCACAAGGCACCGTGAAGTGGTTCAACGACGACAAGGGCTTCGGCTTCATCGCCCAGGACGGCGGTGGCCCGGACGT
GTTCGTCCACCACACCGCGATCGCCGGCACCGGCTTCAAGTCCCTCAAGGACGACCAGCGCGTCGAGTTCGAGGTGACGC
AGGGTCCCAAGGGCCCGCAGGCCGAGAACGTCCGCGCCCAGTAG

Upstream 100 bases:

>100_bases
TTGGTCTTCGGTCAGCTGGACATCAAGCGCAGCGCAGATGTCTTCAGCTCGCGGCCGGCGAGAACGCCGAACGCATCCGA
CACGAACAAGGAACACCAAG

Downstream 100 bases:

>100_bases
TCCCGCCCAGTAGCACCTGCTCGGCAGTACGAGGGGCGGACCACGATCTCGATCGTGGTCCGCCCCTCGTGGCGTTCTCC
GGCGCCTCGGGCGTCCGGCG

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MAQGTVKWFNDDKGFGFIAQDGGGPDVFVHHTAIAGTGFKSLKDDQRVEFEVTQGPKGPQAENVRAQ

Sequences:

>Translated_67_residues
MAQGTVKWFNDDKGFGFIAQDGGGPDVFVHHTAIAGTGFKSLKDDQRVEFEVTQGPKGPQAENVRAQ
>Mature_66_residues
AQGTVKWFNDDKGFGFIAQDGGGPDVFVHHTAIAGTGFKSLKDDQRVEFEVTQGPKGPQAENVRAQ

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=60.9375, Blast_Score=83, Evalue=3e-18,
Organism=Escherichia coli, GI2367114, Length=61, Percent_Identity=59.0163934426229, Blast_Score=79, Evalue=6e-17,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=59.375, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=53.125, Blast_Score=76, Evalue=4e-16,
Organism=Escherichia coli, GI1789979, Length=63, Percent_Identity=57.1428571428571, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI1787834, Length=63, Percent_Identity=55.5555555555556, Blast_Score=72, Evalue=5e-15,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=52.4590163934426, Blast_Score=68, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7235; Mature: 7104

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQGTVKWFNDDKGFGFIAQDGGGPDVFVHHTAIAGTGFKSLKDDQRVEFEVTQGPKGPQ
CCCCCEEEEECCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCC
AENVRAQ
CCCCCCC
>Mature Secondary Structure 
AQGTVKWFNDDKGFGFIAQDGGGPDVFVHHTAIAGTGFKSLKDDQRVEFEVTQGPKGPQ
CCCCEEEEECCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCC
AENVRAQ
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA