| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119717082
Identifier: 119717082
GI number: 119717082
Start: 3031980
End: 3033188
Strand: Reverse
Name: 119717082
Synonym: Noca_2858
Alternate gene names: NA
Gene position: 3033188-3031980 (Counterclockwise)
Preceding gene: 119717083
Following gene: 119717081
Centisome position: 60.84
GC content: 76.84
Gene sequence:
>1209_bases ATGTCGAGCAGGCGACCTAGGCTCCTCCTCGCCGCCGTGCTGGTCGCGGCGGCGCTCGCCGGCTGCTCCGGGTCCGACGA CGAGCCCGCACCGCCCGCCACCGCGGCGGTGCCGCGGGACGTGGTGCACGCCCTCGACCGGGCGCTGGACGCCCGAGCCC GCGTCGTACGGCGCGCCGACGCGACCGCGTTCGCGCGCCTGGTCGGCGGCGGACCCGGGTTCCGGGACCGGCAGGAGACC TGGTTCGGCAACCTGAGCCAGCTGCCGGTCGCCCGGCTGTCCTACCGGGTCGACCCCCGCAGCCTGGTCCGTGACGGCGA CGCCTACCGGGTGACGGTCCGGGAGTCGCTCCAGCTGGCCGGGTACGACGCCGCCCCGGTCACGCGCCAGGGCCGCTACC GGTTCGCACCGGCGGCCCGCCACCCCGGCCGGATGCTGCTGACCGCCGTGACCGAGGCCGACCCGCAGCCCTGGGACACC GGTCCGGTCGAGGTCCGGGAGGGCAGCGGGGTGCTCGGCGTCTTCGACCCCGGCAGCGTCGACCAGGCGCCCGCCCTGAT CGCCTCGGTCGAGGCCGGGGTCGCGGCGGTGTCCGCCGCGGTGCCCTACGACTGGTCGCGCACGGTCGTGGTCTACGCGC TCTCCGACCCGGCGTTCCTCGACGGCCTCGAGGACGTGCCCGGCGACGACCCGGGCGACCTGGACGCGGTCGCGTTCCCC GCCGGTGACGGCACCCGGTTCGTGCTGAACCCGGGGATCGTGGACCGGCCCGGCCGCGAGCGGGACCGGCTGGTGCGCCA CGAGCTCACCCACGTCGCCGTCGGCACCCGCGACGACGACGTGCCCGTCTGGCTCTCCGAGGGGCTCGCGGAGTACGTCT CCGTCCGGCCGCTCGCCCCGGAGGACCGCCGCATCCCCGAGGCCGCGGTCGCCGCGGCCGAGGCGGGCGTGGCCGACCTG CCCGACGACGCGACCTTCAACGACGAGGACTCCGACGCCCACTACGGCCTCGCCTGGTGGGCCGTGGAGTACCTCGTCGA GGCGTACGGCGACGAGGCTCCGTGGCAGCTGCTCGACGCGCTGGGTGTCGCCGGGGCCGATCCCGACGCCGTGCTGCGCG AGCGGTTCGCCACCAGCACCCACGACCTGGCCCGCCAAGCGGACCGGCTGATCCTCGCGCTCTACGACCCGGCCGCCGGG ACGCCGTAG
Upstream 100 bases:
>100_bases CGCGCCGCGATCCTCGAGCGGATCGGCCTGACCCCGCAGGCGATCGCGCTCCGCATCGTGGAGGACATGACCTCGCTGAC CGAAGGTCGTTCTCCTCTCG
Downstream 100 bases:
>100_bases GAGCCGACCGTTTCGGACCGCGGTCGAACGGAAACGGTGAACCCATGAGCCTGATGCGCACCAAGTCCGTCGAGCAGTCG ATCGCCGACACCGAGGACCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MSSRRPRLLLAAVLVAAALAGCSGSDDEPAPPATAAVPRDVVHALDRALDARARVVRRADATAFARLVGGGPGFRDRQET WFGNLSQLPVARLSYRVDPRSLVRDGDAYRVTVRESLQLAGYDAAPVTRQGRYRFAPAARHPGRMLLTAVTEADPQPWDT GPVEVREGSGVLGVFDPGSVDQAPALIASVEAGVAAVSAAVPYDWSRTVVVYALSDPAFLDGLEDVPGDDPGDLDAVAFP AGDGTRFVLNPGIVDRPGRERDRLVRHELTHVAVGTRDDDVPVWLSEGLAEYVSVRPLAPEDRRIPEAAVAAAEAGVADL PDDATFNDEDSDAHYGLAWWAVEYLVEAYGDEAPWQLLDALGVAGADPDAVLRERFATSTHDLARQADRLILALYDPAAG TP
Sequences:
>Translated_402_residues MSSRRPRLLLAAVLVAAALAGCSGSDDEPAPPATAAVPRDVVHALDRALDARARVVRRADATAFARLVGGGPGFRDRQET WFGNLSQLPVARLSYRVDPRSLVRDGDAYRVTVRESLQLAGYDAAPVTRQGRYRFAPAARHPGRMLLTAVTEADPQPWDT GPVEVREGSGVLGVFDPGSVDQAPALIASVEAGVAAVSAAVPYDWSRTVVVYALSDPAFLDGLEDVPGDDPGDLDAVAFP AGDGTRFVLNPGIVDRPGRERDRLVRHELTHVAVGTRDDDVPVWLSEGLAEYVSVRPLAPEDRRIPEAAVAAAEAGVADL PDDATFNDEDSDAHYGLAWWAVEYLVEAYGDEAPWQLLDALGVAGADPDAVLRERFATSTHDLARQADRLILALYDPAAG TP >Mature_401_residues SSRRPRLLLAAVLVAAALAGCSGSDDEPAPPATAAVPRDVVHALDRALDARARVVRRADATAFARLVGGGPGFRDRQETW FGNLSQLPVARLSYRVDPRSLVRDGDAYRVTVRESLQLAGYDAAPVTRQGRYRFAPAARHPGRMLLTAVTEADPQPWDTG PVEVREGSGVLGVFDPGSVDQAPALIASVEAGVAAVSAAVPYDWSRTVVVYALSDPAFLDGLEDVPGDDPGDLDAVAFPA GDGTRFVLNPGIVDRPGRERDRLVRHELTHVAVGTRDDDVPVWLSEGLAEYVSVRPLAPEDRRIPEAAVAAAEAGVADLP DDATFNDEDSDAHYGLAWWAVEYLVEAYGDEAPWQLLDALGVAGADPDAVLRERFATSTHDLARQADRLILALYDPAAGT P
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42875; Mature: 42744
Theoretical pI: Translated: 4.37; Mature: 4.37
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSRRPRLLLAAVLVAAALAGCSGSDDEPAPPATAAVPRDVVHALDRALDARARVVRRAD CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHH ATAFARLVGGGPGFRDRQETWFGNLSQLPVARLSYRVDPRSLVRDGDAYRVTVRESLQLA HHHHHHHHCCCCCCCCCHHHHCCCHHHCCHHHHHCCCCHHHHHCCCCEEEEEEEHHHHHC GYDAAPVTRQGRYRFAPAARHPGRMLLTAVTEADPQPWDTGPVEVREGSGVLGVFDPGSV CCCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCEEEECCCCCC DQAPALIASVEAGVAAVSAAVPYDWSRTVVVYALSDPAFLDGLEDVPGDDPGDLDAVAFP CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHCCHHCCCCCCCCCCCEEEEC AGDGTRFVLNPGIVDRPGRERDRLVRHELTHVAVGTRDDDVPVWLSEGLAEYVSVRPLAP CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHCCCCCC EDRRIPEAAVAAAEAGVADLPDDATFNDEDSDAHYGLAWWAVEYLVEAYGDEAPWQLLDA CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH LGVAGADPDAVLRERFATSTHDLARQADRLILALYDPAAGTP HCCCCCCHHHHHHHHHCCHHHHHHHHHCEEEEEEECCCCCCC >Mature Secondary Structure SSRRPRLLLAAVLVAAALAGCSGSDDEPAPPATAAVPRDVVHALDRALDARARVVRRAD CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHH ATAFARLVGGGPGFRDRQETWFGNLSQLPVARLSYRVDPRSLVRDGDAYRVTVRESLQLA HHHHHHHHCCCCCCCCCHHHHCCCHHHCCHHHHHCCCCHHHHHCCCCEEEEEEEHHHHHC GYDAAPVTRQGRYRFAPAARHPGRMLLTAVTEADPQPWDTGPVEVREGSGVLGVFDPGSV CCCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCEEEECCCCCC DQAPALIASVEAGVAAVSAAVPYDWSRTVVVYALSDPAFLDGLEDVPGDDPGDLDAVAFP CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHCCHHCCCCCCCCCCCEEEEC AGDGTRFVLNPGIVDRPGRERDRLVRHELTHVAVGTRDDDVPVWLSEGLAEYVSVRPLAP CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHCCCCCC EDRRIPEAAVAAAEAGVADLPDDATFNDEDSDAHYGLAWWAVEYLVEAYGDEAPWQLLDA CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH LGVAGADPDAVLRERFATSTHDLARQADRLILALYDPAAGTP HCCCCCCHHHHHHHHHCCHHHHHHHHHCEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA