| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119716955
Identifier: 119716955
GI number: 119716955
Start: 2904052
End: 2904816
Strand: Reverse
Name: 119716955
Synonym: Noca_2730
Alternate gene names: NA
Gene position: 2904816-2904052 (Counterclockwise)
Preceding gene: 119716956
Following gene: 119716954
Centisome position: 58.26
GC content: 73.99
Gene sequence:
>765_bases GTGCCTCGCCTGTCCCGTCGCGCGCCGCTGTGGGTCGCGCTCCTCGCGCTGGTCCCCGTCCTGCTGACCACCACGGCGGT GGCGCCGACCGCCGCCGGCGCCGAGCGCGCCCAGGGCGCTGCCGCGTTCACGTTCGGCACCCACAACAGCCACCGCGGCA CCGGGCGGTTCACCGGGTTCGCCGACGTCATCTGCTGGCAGGAGGTCGCGCTGCCGCAGTCGAAGGAGAAGCTCCTGAGG AGCATGCGCGGCTACGACCACTACGTCGAGTCCGGTGTGGCCGGTCAGGTACCGCTGTCCTGGCGCGCGGACCGGTTCAG CCTGGTCGACGCCGACACGGTCCAGGCCGCGCCGCGGGTGAAGTCCTACTCGCCTCCGCGGTTCATCACCCGCGCCGTGC TGCGCGACGCCGTGACCGGACGCCTGGTCGCGGTCTACAACACCCACATGGTGCAGGGCGCCTGGAACCAGCGGCGCAAG CCGTTCAAGCAGATGCGACAGCGGAACTGGCGCGAGCACGCCCGGGTGCTGCGTCGCGAGCTGCGCCGCGCGGACCGCGA CATCCCGGTGCTGGCCTGCGGCGACTTCAACCGGGTGCGCTACCTCGACCTGCCCGGCCTCGCCCCGATCCGGAGGCAGG GCGGGCGTACCGGCCTCGACCACCTGTACCGGGACGCCCGCGGCGTGAGCGCCCGCCCGGCGCGCACCGAGGGCAACGCC GGCTCCGACCACCCGCGCCTGGTGAGCACGATCCGGCTCCGCTGA
Upstream 100 bases:
>100_bases CCGGCCCGTCCGCCCTTCAGGTCTCGTCCGGGCCTGCCGATGGTGGAGGAGTCAGTCTCGGGCGCGACGCCGCGCCGTTC CTCCCGTCCGGAAGGTTCCC
Downstream 100 bases:
>100_bases CCGGCGCGGCCGGTGGTGGGCCGGGCGACGCGCCCGTTGCCCGGAACTGGAACACGTTCTAGTCTCGGGGGCATGACGGA CGACCTGCGACTCGGCACCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 254; Mature: 253
Protein sequence:
>254_residues MPRLSRRAPLWVALLALVPVLLTTTAVAPTAAGAERAQGAAAFTFGTHNSHRGTGRFTGFADVICWQEVALPQSKEKLLR SMRGYDHYVESGVAGQVPLSWRADRFSLVDADTVQAAPRVKSYSPPRFITRAVLRDAVTGRLVAVYNTHMVQGAWNQRRK PFKQMRQRNWREHARVLRRELRRADRDIPVLACGDFNRVRYLDLPGLAPIRRQGGRTGLDHLYRDARGVSARPARTEGNA GSDHPRLVSTIRLR
Sequences:
>Translated_254_residues MPRLSRRAPLWVALLALVPVLLTTTAVAPTAAGAERAQGAAAFTFGTHNSHRGTGRFTGFADVICWQEVALPQSKEKLLR SMRGYDHYVESGVAGQVPLSWRADRFSLVDADTVQAAPRVKSYSPPRFITRAVLRDAVTGRLVAVYNTHMVQGAWNQRRK PFKQMRQRNWREHARVLRRELRRADRDIPVLACGDFNRVRYLDLPGLAPIRRQGGRTGLDHLYRDARGVSARPARTEGNA GSDHPRLVSTIRLR >Mature_253_residues PRLSRRAPLWVALLALVPVLLTTTAVAPTAAGAERAQGAAAFTFGTHNSHRGTGRFTGFADVICWQEVALPQSKEKLLRS MRGYDHYVESGVAGQVPLSWRADRFSLVDADTVQAAPRVKSYSPPRFITRAVLRDAVTGRLVAVYNTHMVQGAWNQRRKP FKQMRQRNWREHARVLRRELRRADRDIPVLACGDFNRVRYLDLPGLAPIRRQGGRTGLDHLYRDARGVSARPARTEGNAG SDHPRLVSTIRLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28507; Mature: 28376
Theoretical pI: Translated: 12.01; Mature: 12.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRLSRRAPLWVALLALVPVLLTTTAVAPTAAGAERAQGAAAFTFGTHNSHRGTGRFTGF CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEECCCCCCCCCCCCCHH ADVICWQEVALPQSKEKLLRSMRGYDHYVESGVAGQVPLSWRADRFSLVDADTVQAAPRV HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCHHHHHCCCC KSYSPPRFITRAVLRDAVTGRLVAVYNTHMVQGAWNQRRKPFKQMRQRNWREHARVLRRE CCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH LRRADRDIPVLACGDFNRVRYLDLPGLAPIRRQGGRTGLDHLYRDARGVSARPARTEGNA HHHHCCCCCEEEECCCCCEEEECCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCC GSDHPRLVSTIRLR CCCCCHHHHHHCCC >Mature Secondary Structure PRLSRRAPLWVALLALVPVLLTTTAVAPTAAGAERAQGAAAFTFGTHNSHRGTGRFTGF CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEECCCCCCCCCCCCCHH ADVICWQEVALPQSKEKLLRSMRGYDHYVESGVAGQVPLSWRADRFSLVDADTVQAAPRV HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCHHHHHCCCC KSYSPPRFITRAVLRDAVTGRLVAVYNTHMVQGAWNQRRKPFKQMRQRNWREHARVLRRE CCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH LRRADRDIPVLACGDFNRVRYLDLPGLAPIRRQGGRTGLDHLYRDARGVSARPARTEGNA HHHHCCCCCEEEECCCCCEEEECCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCC GSDHPRLVSTIRLR CCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA