| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is yihQ [H]
Identifier: 119716689
GI number: 119716689
Start: 2620902
End: 2623208
Strand: Direct
Name: yihQ [H]
Synonym: Noca_2463
Alternate gene names: 119716689
Gene position: 2620902-2623208 (Clockwise)
Preceding gene: 119716688
Following gene: 119716690
Centisome position: 52.57
GC content: 75.6
Gene sequence:
>2307_bases GTGCCCCCGCGTCGCCTGCTGATCCGACTCGCCCTCGCGCTGAACCTCGCGCTGGCCCTCCCGGTGGCCCTCGTCGCCCC CGGTGCCGTCGAGGCCGCCGCACCCCGGGCCGCCGGGGTCCCCGTGGACCTGGTCGACACCGTGACGCCGGGCAGCCTCG ACGTCACGCCCGGCGCCACCGGGACCTGGACCGTCGGCGACCTGACGGTGGACGTCAGCGCGGCCGCGGGATTGAGCGTG CGGTCCGGCTCCCGGACCGTGTGGGCGGCCCCACCCGGTGGCGCCTTCGTGACCGGCGGCCGCGGGTCGGTCTCCTGGGA GGAGCACCGGGGCTACTTCTGGCCGACCGTGTCCTACACCGACCGGCTCACCGAGCAGAGCGTCGACACGGTGCAGGCCT CGGCCGACGACATCGTGCTCACCGGCCGGCTCAGCGGCCCGCTGGCTCCGGGCGGCGACGCGGCGTACACGCTGACCGTG CGGGCCCGCGCGGCCGGGGGAGCGGCGCTCGACCTGACCAGCTCGGCGGCTGTCCCGCTGACCTCGGTGGCCCTGGTGTC CGGCCGCTCGGCGCATGCCGGCGTGCACGGCTTCGGTGAGCAGTTCAGCGACTTCGACCTCGACGGCCGGCTGCTGCCCA TCGTCGCCCGGGAGCAGGGCGTCGGCCGCGGCGAGGAGCCGATCACCTCCCTCGCGGACGCGACCAACCACGGCGCGGGC GGGACCAGGGACATGACCTACGCCGCCTGGCCCTCCTTCGTCACCGACGATCTCCGCGGCCTGCGCCTGGACGCGGCCGC CTCCTCGTCGACGGCGTTCGCGGTCGCCGACACCCGGGACCCCGACGCGGTCGCGCTCGAGCTGTGGTCGCCCACGCTCT CGGCGCAGGCGTCCGCGGCCGCGACGCCCGCGCGGCTGGTCGCCGCCCAGCAGGCGGGTGACCAGCGGCGCCCGCTGGCG CGCTGGGCCACCCGCGGCGCCATCGTCGGCCTCCAGGGCGGCACCCAGGAGGTACGTCGCGAGCTGGGCCGGCTCCTCGA CGCGGGCGCGAACGTGTCCGGGGTCTGGATCCAGGACTGGACCGGCAAGCGCACCACCTCGTTCGGTGACCGGCTGTGGT GGACCTGGCAGCTGGACCGGGAGCGCTACCCAGGCTGGGCCCGGCTCGTGCGCCGGCTCTCGGCGCTCGGGATCACGACG ACCACCTACGTCAACCCGTTCCTGGTCGATGCCGCACCCAAGGGGGATCCCGGCATCCGGAACCTGTGGGCCGAGGCCCG TGACCGAGGATTCCTGGTCACCGACGAGTCGGGCGCGCCGTACGCCCTGGACCAGGGTGAGTTCGAGGCGTCGCTGGTCG ACCTGACCGACCCGGCCGCCCGGTCCTGGTTCGCCGAGGTGATCGCCCGCTACGTGCTCGCCGACGGGGTGCGCGGCTTC ATGGCCGACTTCGCCGAGGGTCTGCCCTTCGACGCGCGGCTGCACACCGGCACTCCCGCCACGCTGCACAACCGTTGGCC GGCGCTGTGGGCGAGGACGGTGCGGCTGGCCTGCCGACGGGCCGAGCAGCCTCGGTGCGTCACGTGGTTCCGCAGCGGCG CCCTCGGCCAGGCGGCGCACGCCCCGCTGTTCTGGAACGGCGACCAGCTGGTCACCTTCGGCCGCGAGGACGGCCTCGCG TCCGCGCTCCTGGGGACGCTGTCGGCGGGCGTCTCCGGGTGGCCGCTGGTCCACTCGGACGTCGGCGGCTACACCTCGGT CAACGCGGTCGTGAAGAACTACGTCCGGACGCCGGAGCTGCTGGCCAGGTGGGCGGAGTTCCAGGCGTTCGGGGTCGTGC TGCGCACCCACGAGGGCAACCGGCCGGCGGACAACCCCCAGGTCTTCAGCACCCGCGACACCGCTCGCGCCTTCGCCCGG TCGACCCGGATCTTCGGCGCGCTGGCGCCGTACCGCGACCGGGTCGTCCGCGCGGCGACCCGCACGGGCGTCCCGGCGGT GCGCCCGATCTGGCTGGTCGCACCGGGCTCGTCGGCTGCGGCGTCCGACACCGAGTTCTTCCTCGGCCGGCACGTGCTCG TCGCACCGGTCCTGGAGGCCGGGGCCACCTCCGTGCCGGTGATCCTCCCGCCCGGCCGGTGGGTGCACCTGTTCACCGGA CGCGGGTACGCCGGAGACCGGACCGTGACCGTGCCCGCGCCGATCGGGCGCCCGGCCGCCTTCGTGCGGGAGGGCGGGCC GTGGTCGACGCGGCTCCCCGCACGGTTCCGGGCCGCCGGACTGACTGCTCTAGGCTCGGGGGCGTGA
Upstream 100 bases:
>100_bases ATCCCGATCTACGGCCGCGCCGAGAGCCTCAACCTGTCCACCGCGGCGGCACTCTGCCTTTACGCCTCGGCCCGGGTCCA GCGTCGGTAACCTCGCGGCC
Downstream 100 bases:
>100_bases GCCAGGCGGACCTCGACGCGCTCGCCGACGGCACCGTGCTGGCCGGCCCCGACGGCCGGGTCACCGCGGTCAACGTGGCC GCCGCCCGGCTCCTCGGCGC
Product: alpha-glucosidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 768; Mature: 767
Protein sequence:
>768_residues MPPRRLLIRLALALNLALALPVALVAPGAVEAAAPRAAGVPVDLVDTVTPGSLDVTPGATGTWTVGDLTVDVSAAAGLSV RSGSRTVWAAPPGGAFVTGGRGSVSWEEHRGYFWPTVSYTDRLTEQSVDTVQASADDIVLTGRLSGPLAPGGDAAYTLTV RARAAGGAALDLTSSAAVPLTSVALVSGRSAHAGVHGFGEQFSDFDLDGRLLPIVAREQGVGRGEEPITSLADATNHGAG GTRDMTYAAWPSFVTDDLRGLRLDAAASSSTAFAVADTRDPDAVALELWSPTLSAQASAAATPARLVAAQQAGDQRRPLA RWATRGAIVGLQGGTQEVRRELGRLLDAGANVSGVWIQDWTGKRTTSFGDRLWWTWQLDRERYPGWARLVRRLSALGITT TTYVNPFLVDAAPKGDPGIRNLWAEARDRGFLVTDESGAPYALDQGEFEASLVDLTDPAARSWFAEVIARYVLADGVRGF MADFAEGLPFDARLHTGTPATLHNRWPALWARTVRLACRRAEQPRCVTWFRSGALGQAAHAPLFWNGDQLVTFGREDGLA SALLGTLSAGVSGWPLVHSDVGGYTSVNAVVKNYVRTPELLARWAEFQAFGVVLRTHEGNRPADNPQVFSTRDTARAFAR STRIFGALAPYRDRVVRAATRTGVPAVRPIWLVAPGSSAAASDTEFFLGRHVLVAPVLEAGATSVPVILPPGRWVHLFTG RGYAGDRTVTVPAPIGRPAAFVREGGPWSTRLPARFRAAGLTALGSGA
Sequences:
>Translated_768_residues MPPRRLLIRLALALNLALALPVALVAPGAVEAAAPRAAGVPVDLVDTVTPGSLDVTPGATGTWTVGDLTVDVSAAAGLSV RSGSRTVWAAPPGGAFVTGGRGSVSWEEHRGYFWPTVSYTDRLTEQSVDTVQASADDIVLTGRLSGPLAPGGDAAYTLTV RARAAGGAALDLTSSAAVPLTSVALVSGRSAHAGVHGFGEQFSDFDLDGRLLPIVAREQGVGRGEEPITSLADATNHGAG GTRDMTYAAWPSFVTDDLRGLRLDAAASSSTAFAVADTRDPDAVALELWSPTLSAQASAAATPARLVAAQQAGDQRRPLA RWATRGAIVGLQGGTQEVRRELGRLLDAGANVSGVWIQDWTGKRTTSFGDRLWWTWQLDRERYPGWARLVRRLSALGITT TTYVNPFLVDAAPKGDPGIRNLWAEARDRGFLVTDESGAPYALDQGEFEASLVDLTDPAARSWFAEVIARYVLADGVRGF MADFAEGLPFDARLHTGTPATLHNRWPALWARTVRLACRRAEQPRCVTWFRSGALGQAAHAPLFWNGDQLVTFGREDGLA SALLGTLSAGVSGWPLVHSDVGGYTSVNAVVKNYVRTPELLARWAEFQAFGVVLRTHEGNRPADNPQVFSTRDTARAFAR STRIFGALAPYRDRVVRAATRTGVPAVRPIWLVAPGSSAAASDTEFFLGRHVLVAPVLEAGATSVPVILPPGRWVHLFTG RGYAGDRTVTVPAPIGRPAAFVREGGPWSTRLPARFRAAGLTALGSGA >Mature_767_residues PPRRLLIRLALALNLALALPVALVAPGAVEAAAPRAAGVPVDLVDTVTPGSLDVTPGATGTWTVGDLTVDVSAAAGLSVR SGSRTVWAAPPGGAFVTGGRGSVSWEEHRGYFWPTVSYTDRLTEQSVDTVQASADDIVLTGRLSGPLAPGGDAAYTLTVR ARAAGGAALDLTSSAAVPLTSVALVSGRSAHAGVHGFGEQFSDFDLDGRLLPIVAREQGVGRGEEPITSLADATNHGAGG TRDMTYAAWPSFVTDDLRGLRLDAAASSSTAFAVADTRDPDAVALELWSPTLSAQASAAATPARLVAAQQAGDQRRPLAR WATRGAIVGLQGGTQEVRRELGRLLDAGANVSGVWIQDWTGKRTTSFGDRLWWTWQLDRERYPGWARLVRRLSALGITTT TYVNPFLVDAAPKGDPGIRNLWAEARDRGFLVTDESGAPYALDQGEFEASLVDLTDPAARSWFAEVIARYVLADGVRGFM ADFAEGLPFDARLHTGTPATLHNRWPALWARTVRLACRRAEQPRCVTWFRSGALGQAAHAPLFWNGDQLVTFGREDGLAS ALLGTLSAGVSGWPLVHSDVGGYTSVNAVVKNYVRTPELLARWAEFQAFGVVLRTHEGNRPADNPQVFSTRDTARAFARS TRIFGALAPYRDRVVRAATRTGVPAVRPIWLVAPGSSAAASDTEFFLGRHVLVAPVLEAGATSVPVILPPGRWVHLFTGR GYAGDRTVTVPAPIGRPAAFVREGGPWSTRLPARFRAAGLTALGSGA
Specific function: Exhibits hydrolysis activity against alpha-glucosyl fluoride, although natural substrates, such as alpha-glucobioses are scarcely hydrolyzed [H]
COG id: COG1501
COG function: function code G; Alpha-glucosidases, family 31 of glycosyl hydrolases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 31 family [H]
Homologues:
Organism=Homo sapiens, GI153791946, Length=421, Percent_Identity=27.0783847980998, Blast_Score=86, Evalue=1e-16, Organism=Escherichia coli, GI2367323, Length=603, Percent_Identity=35.3233830845771, Blast_Score=369, Evalue=1e-103, Organism=Escherichia coli, GI2367256, Length=361, Percent_Identity=26.8698060941828, Blast_Score=123, Evalue=5e-29, Organism=Caenorhabditis elegans, GI17560798, Length=396, Percent_Identity=24.4949494949495, Blast_Score=82, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17560800, Length=396, Percent_Identity=24.4949494949495, Blast_Score=82, Evalue=7e-16, Organism=Caenorhabditis elegans, GI32563849, Length=209, Percent_Identity=31.5789473684211, Blast_Score=75, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71985706, Length=207, Percent_Identity=28.0193236714976, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI24650054, Length=421, Percent_Identity=25.6532066508314, Blast_Score=96, Evalue=9e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011013 - InterPro: IPR000322 - InterPro: IPR017853 [H]
Pfam domain/function: PF01055 Glyco_hydro_31 [H]
EC number: =3.2.1.20 [H]
Molecular weight: Translated: 81252; Mature: 81121
Theoretical pI: Translated: 9.23; Mature: 9.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPRRLLIRLALALNLALALPVALVAPGAVEAAAPRAAGVPVDLVDTVTPGSLDVTPGAT CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEHECCCCCCCEEECCCCC GTWTVGDLTVDVSAAAGLSVRSGSRTVWAAPPGGAFVTGGRGSVSWEEHRGYFWPTVSYT CEEEEEEEEEEEECCCCCEEECCCEEEEECCCCCEEEECCCCCCCHHHCCCEECCCCCHH DRLTEQSVDTVQASADDIVLTGRLSGPLAPGGDAAYTLTVRARAAGGAALDLTSSAAVPL HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCC TSVALVSGRSAHAGVHGFGEQFSDFDLDGRLLPIVAREQGVGRGEEPITSLADATNHGAG EEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCCC GTRDMTYAAWPSFVTDDLRGLRLDAAASSSTAFAVADTRDPDAVALELWSPTLSAQASAA CCCCCEEECCCCHHHHHHCCEEEECCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCC ATPARLVAAQQAGDQRRPLARWATRGAIVGLQGGTQEVRRELGRLLDAGANVSGVWIQDW CCHHHHHHHHHCCCCCCHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECC TGKRTTSFGDRLWWTWQLDRERYPGWARLVRRLSALGITTTTYVNPFLVDAAPKGDPGIR CCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEHCCCEEEEECCCCCCCHHH NLWAEARDRGFLVTDESGAPYALDQGEFEASLVDLTDPAARSWFAEVIARYVLADGVRGF HHHHHHCCCCEEEECCCCCCEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH MADFAEGLPFDARLHTGTPATLHNRWPALWARTVRLACRRAEQPRCVTWFRSGALGQAAH HHHHHHCCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCCHHC APLFWNGDQLVTFGREDGLASALLGTLSAGVSGWPLVHSDVGGYTSVNAVVKNYVRTPEL CCEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCHHH LARWAEFQAFGVVLRTHEGNRPADNPQVFSTRDTARAFARSTRIFGALAPYRDRVVRAAT HHHHHHHHEEEEEEEECCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCHHHHHHHHHHH RTGVPAVRPIWLVAPGSSAAASDTEFFLGRHVLVAPVLEAGATSVPVILPPGRWVHLFTG HCCCCCCCEEEEEECCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCEEECCCCEEEEEEC RGYAGDRTVTVPAPIGRPAAFVREGGPWSTRLPARFRAAGLTALGSGA CCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCHHHHCCCCCCCCCC >Mature Secondary Structure PPRRLLIRLALALNLALALPVALVAPGAVEAAAPRAAGVPVDLVDTVTPGSLDVTPGAT CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEHECCCCCCCEEECCCCC GTWTVGDLTVDVSAAAGLSVRSGSRTVWAAPPGGAFVTGGRGSVSWEEHRGYFWPTVSYT CEEEEEEEEEEEECCCCCEEECCCEEEEECCCCCEEEECCCCCCCHHHCCCEECCCCCHH DRLTEQSVDTVQASADDIVLTGRLSGPLAPGGDAAYTLTVRARAAGGAALDLTSSAAVPL HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCC TSVALVSGRSAHAGVHGFGEQFSDFDLDGRLLPIVAREQGVGRGEEPITSLADATNHGAG EEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCCC GTRDMTYAAWPSFVTDDLRGLRLDAAASSSTAFAVADTRDPDAVALELWSPTLSAQASAA CCCCCEEECCCCHHHHHHCCEEEECCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCC ATPARLVAAQQAGDQRRPLARWATRGAIVGLQGGTQEVRRELGRLLDAGANVSGVWIQDW CCHHHHHHHHHCCCCCCHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECC TGKRTTSFGDRLWWTWQLDRERYPGWARLVRRLSALGITTTTYVNPFLVDAAPKGDPGIR CCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEHCCCEEEEECCCCCCCHHH NLWAEARDRGFLVTDESGAPYALDQGEFEASLVDLTDPAARSWFAEVIARYVLADGVRGF HHHHHHCCCCEEEECCCCCCEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH MADFAEGLPFDARLHTGTPATLHNRWPALWARTVRLACRRAEQPRCVTWFRSGALGQAAH HHHHHHCCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCCHHC APLFWNGDQLVTFGREDGLASALLGTLSAGVSGWPLVHSDVGGYTSVNAVVKNYVRTPEL CCEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCHHH LARWAEFQAFGVVLRTHEGNRPADNPQVFSTRDTARAFARSTRIFGALAPYRDRVVRAAT HHHHHHHHEEEEEEEECCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCHHHHHHHHHHH RTGVPAVRPIWLVAPGSSAAASDTEFFLGRHVLVAPVLEAGATSVPVILPPGRWVHLFTG HCCCCCCCEEEEEECCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCEEECCCCEEEEEEC RGYAGDRTVTVPAPIGRPAAFVREGGPWSTRLPARFRAAGLTALGSGA CCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8346018; 9278503 [H]