| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119716503
Identifier: 119716503
GI number: 119716503
Start: 2425729
End: 2426367
Strand: Direct
Name: 119716503
Synonym: Noca_2276
Alternate gene names: NA
Gene position: 2425729-2426367 (Clockwise)
Preceding gene: 119716502
Following gene: 119716515
Centisome position: 48.65
GC content: 66.04
Gene sequence:
>639_bases GTGCGGTTGCTGTACGTGATCGTCGGTGTTGTCGTGGGGGTCAGCGTCCTGAACGCCCCTGCGTATGGGGAAGAGGAGCG GTTGCGGGATGCCGTACGGCAGCTGTCGGTGGCTCGAGAGACCAACGTCGGTTACGACCGCGAGAAGTTCCAGCACTGGA TCGACGTCGACGGCGACTGCCAGGACACCCGTGCCGAGGTCCTCATCGCAGAGTCCCGCGATGGGACGACGGGCGGGTGC GTCGTCGCGACAGGGGAGTGGTTCTCTTACTACGACCGCGAGACGTGGACCGATGCGAGCGACGTCGATATCGATCACAT GGTGGCGCTGGCCGAGGCGTGGGGTTCTGGTGCGAAGCGCTGGACTGGGGCGACCAGGAAGCGGTTCGCGAATGATCTGC GCGACCGACGGGCGCTGGTCGCTGTCACAGACAACGTCAACCAGTCCAAGGGGGACCGCGACCCGGCTGAGTGGATGCCC CAGTACGGCCAGTGCCGGTACCTCCGCGAGTGGGTCGCGATCAAGCTGCGGTGGAGCCTGAAGGTGAACCGGGCAGAGAG GCGGCGGCTGGTGGAGCTGGCCGGTGGCTGCAGGAACAAGTCGCTTCGGTGGACACCTGCCCGCGTCGTGTACCGATAG
Upstream 100 bases:
>100_bases GGCGGCCGTAGAGCGCATGCGTCGCCGGGCCGTCGGTGCTCATCGCTAACGTGACGCGGTGCCGTCGTCGTGGGTCGAGG GCAGACGGAGGAGGAGATCG
Downstream 100 bases:
>100_bases AAGCGGATTGATGCGCGGACGGCATTCGGACTGCGTGCGCACGTCTCCGCTGAGCTAGTCTTCGAGCGTGATCCCTCGGC ACCAATGACAGCCCTGCAGA
Product: secreted protein
Products: NA
Alternate protein names: Lipoprotein; Extracellular Deoxyribonuclease; S-Layer Domain-Containing Protein; Excalibur Domain-Containing Protein; Excalibur Domain Protein; Conserved Membrane Protein; S-Layer Domain Protein; Cation Transport ATPase
Number of amino acids: Translated: 212; Mature: 212
Protein sequence:
>212_residues MRLLYVIVGVVVGVSVLNAPAYGEEERLRDAVRQLSVARETNVGYDREKFQHWIDVDGDCQDTRAEVLIAESRDGTTGGC VVATGEWFSYYDRETWTDASDVDIDHMVALAEAWGSGAKRWTGATRKRFANDLRDRRALVAVTDNVNQSKGDRDPAEWMP QYGQCRYLREWVAIKLRWSLKVNRAERRRLVELAGGCRNKSLRWTPARVVYR
Sequences:
>Translated_212_residues MRLLYVIVGVVVGVSVLNAPAYGEEERLRDAVRQLSVARETNVGYDREKFQHWIDVDGDCQDTRAEVLIAESRDGTTGGC VVATGEWFSYYDRETWTDASDVDIDHMVALAEAWGSGAKRWTGATRKRFANDLRDRRALVAVTDNVNQSKGDRDPAEWMP QYGQCRYLREWVAIKLRWSLKVNRAERRRLVELAGGCRNKSLRWTPARVVYR >Mature_212_residues MRLLYVIVGVVVGVSVLNAPAYGEEERLRDAVRQLSVARETNVGYDREKFQHWIDVDGDCQDTRAEVLIAESRDGTTGGC VVATGEWFSYYDRETWTDASDVDIDHMVALAEAWGSGAKRWTGATRKRFANDLRDRRALVAVTDNVNQSKGDRDPAEWMP QYGQCRYLREWVAIKLRWSLKVNRAERRRLVELAGGCRNKSLRWTPARVVYR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24300; Mature: 24300
Theoretical pI: Translated: 8.60; Mature: 8.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLLYVIVGVVVGVSVLNAPAYGEEERLRDAVRQLSVARETNVGYDREKFQHWIDVDGDC CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCC QDTRAEVLIAESRDGTTGGCVVATGEWFSYYDRETWTDASDVDIDHMVALAEAWGSGAKR CCCCEEEEEEECCCCCCCCEEEECCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHH WTGATRKRFANDLRDRRALVAVTDNVNQSKGDRDPAEWMPQYGQCRYLREWVAIKLRWSL HCCHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHEEEEEEEE KVNRAERRRLVELAGGCRNKSLRWTPARVVYR EECHHHHHHHHHHHCCCCCCCCCCCHHHEECC >Mature Secondary Structure MRLLYVIVGVVVGVSVLNAPAYGEEERLRDAVRQLSVARETNVGYDREKFQHWIDVDGDC CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCC QDTRAEVLIAESRDGTTGGCVVATGEWFSYYDRETWTDASDVDIDHMVALAEAWGSGAKR CCCCEEEEEEECCCCCCCCEEEECCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHH WTGATRKRFANDLRDRRALVAVTDNVNQSKGDRDPAEWMPQYGQCRYLREWVAIKLRWSL HCCHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHEEEEEEEE KVNRAERRRLVELAGGCRNKSLRWTPARVVYR EECHHHHHHHHHHHCCCCCCCCCCCHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA