| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119716392
Identifier: 119716392
GI number: 119716392
Start: 2311697
End: 2312212
Strand: Reverse
Name: 119716392
Synonym: Noca_2161
Alternate gene names: NA
Gene position: 2312212-2311697 (Counterclockwise)
Preceding gene: 119716393
Following gene: 119716389
Centisome position: 46.38
GC content: 65.7
Gene sequence:
>516_bases ATGAAGGATGATCCAAAGCCGAGCCGCGCTGGCGTCCTCCATGCGGTGATCGAGGAGATCCTCGCCCGCAATGACGGGCA GATTCCCACCGACATCGTCGGCATCGACACCCTCTTCGATGGCATCGAAGACCTCGCGAACGCTCTTCTGCTCCGATGGC ACACACGCCTGGTGGCATCGCTGGAACGAGGGCTCGCCGACGAACCCGAGGACCGCGAGGACTCCGTCATCGAGGCATGG CAGCACGCCAACTGGATCTACCGGGGCGTCCGGAAGGTCATCGACGACCTCGCGGACCACCCGCCCAACGCGGAAGTTGC ACACGCCGTCCGCGCAACCGCACGCAACGACTGGGCCGCCATGGCCCTCGCGGCCGGGCTGGCCAGTGCTTTCGATGAAC CAGCTGTCCGAGTCGGACACCGTCTCGAACTCGAAGCGCGGCGCCGCCTGAGGCTTGCAACACACCCGGAGGCCCGCAAA CGACGATCCTGGAAGCCCGTTGCCTGGATGGGATAG
Upstream 100 bases:
>100_bases GACTCAGCGGTGCGACTCCGCTCCGGGCCGATCCGCGGGTACTCCTCGCTGCCCCTGCGATAGGACACGCGCACACCGCA TCCTCAGGAAGGGGACACCC
Downstream 100 bases:
>100_bases TGCAGGCGGGTTCACCAGATGTAGCGACCTGCCGTGCGCTATCGAGGAGTCAAGCTTGTCGAGGGTCTCGACGTCCGCAC GCCTCCCGCCCAGACCCAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 171; Mature: 171
Protein sequence:
>171_residues MKDDPKPSRAGVLHAVIEEILARNDGQIPTDIVGIDTLFDGIEDLANALLLRWHTRLVASLERGLADEPEDREDSVIEAW QHANWIYRGVRKVIDDLADHPPNAEVAHAVRATARNDWAAMALAAGLASAFDEPAVRVGHRLELEARRRLRLATHPEARK RRSWKPVAWMG
Sequences:
>Translated_171_residues MKDDPKPSRAGVLHAVIEEILARNDGQIPTDIVGIDTLFDGIEDLANALLLRWHTRLVASLERGLADEPEDREDSVIEAW QHANWIYRGVRKVIDDLADHPPNAEVAHAVRATARNDWAAMALAAGLASAFDEPAVRVGHRLELEARRRLRLATHPEARK RRSWKPVAWMG >Mature_171_residues MKDDPKPSRAGVLHAVIEEILARNDGQIPTDIVGIDTLFDGIEDLANALLLRWHTRLVASLERGLADEPEDREDSVIEAW QHANWIYRGVRKVIDDLADHPPNAEVAHAVRATARNDWAAMALAAGLASAFDEPAVRVGHRLELEARRRLRLATHPEARK RRSWKPVAWMG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19166; Mature: 19166
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDDPKPSRAGVLHAVIEEILARNDGQIPTDIVGIDTLFDGIEDLANALLLRWHTRLVAS CCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LERGLADEPEDREDSVIEAWQHANWIYRGVRKVIDDLADHPPNAEVAHAVRATARNDWAA HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHH MALAAGLASAFDEPAVRVGHRLELEARRRLRLATHPEARKRRSWKPVAWMG HHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCC >Mature Secondary Structure MKDDPKPSRAGVLHAVIEEILARNDGQIPTDIVGIDTLFDGIEDLANALLLRWHTRLVAS CCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LERGLADEPEDREDSVIEAWQHANWIYRGVRKVIDDLADHPPNAEVAHAVRATARNDWAA HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHH MALAAGLASAFDEPAVRVGHRLELEARRRLRLATHPEARKRRSWKPVAWMG HHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA