| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119716353
Identifier: 119716353
GI number: 119716353
Start: 2269010
End: 2269612
Strand: Direct
Name: 119716353
Synonym: Noca_2122
Alternate gene names: NA
Gene position: 2269010-2269612 (Clockwise)
Preceding gene: 119716352
Following gene: 119716354
Centisome position: 45.51
GC content: 65.01
Gene sequence:
>603_bases ATGACGTGGAACCTGGCCGGCAGCTACAGCGAGACCTGCTCCTGCGAGCTCATGTGCCCCTGCAACATGTCTTTCGACCA CGGGGCCACCTACGACTTCTGCCGCGTGACGCTGGCCTTCAACGTCCATGAGGGCTCGGTGGAAGGCACCGACATCGCCG GGCGGAAGGTCGTGCTGATCGCAGACACCCCGAAGGTCATGACGGACGGCAACTGGCGCGTGGGCGTGTTCGTCGACGAC GGAGCGTCGGAGGAGCAGTTCGACAAGCTGGTCCAGGTCTTCGGCGGCCAGCTGGGTGGCCCGATGGCGGGACTCGCACC GCTGATCGGGGAGATGCTCGGCGTGCAGCGCGCGGCCATCGACATCGAGGACGACGGCCTGCTGCACAGCGTCCGGGTCG GTGACGAGATCGACTTCCAGATCCAGGACATCGTCCCGTTCGGCGTTGAGACTGGTGAGCCGGTGAGGTTCGCGGGGATG TTCCACCCGGTGGGGTCGGATCTGGTGATGGCTGAGGCGAAGCGCACCAGGATCAACGCCTTCGGCATCACCTACGAAGG AAAGACGGGGTTGTCGAAGTCGAGCTTCACCTGGGCCGCTTGA
Upstream 100 bases:
>100_bases CGCCGCGCCGGAGGAGGGGACACGATGCCGGCCGCAAGCCGTTGACGCCCTGGTCGGTCCGGGAGAACACTGACCGGAAG CGAGCGCGAAGGGGAGTCCG
Downstream 100 bases:
>100_bases GCCCATGACCGAGGCAGAGTCGATCACCGGCTCGGGCCTTGGACCGGCATACGCTGCGTCGCGTGCCCATGTCGGGATCG TTGCTGTGCTCGTCGCGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 200; Mature: 199
Protein sequence:
>200_residues MTWNLAGSYSETCSCELMCPCNMSFDHGATYDFCRVTLAFNVHEGSVEGTDIAGRKVVLIADTPKVMTDGNWRVGVFVDD GASEEQFDKLVQVFGGQLGGPMAGLAPLIGEMLGVQRAAIDIEDDGLLHSVRVGDEIDFQIQDIVPFGVETGEPVRFAGM FHPVGSDLVMAEAKRTRINAFGITYEGKTGLSKSSFTWAA
Sequences:
>Translated_200_residues MTWNLAGSYSETCSCELMCPCNMSFDHGATYDFCRVTLAFNVHEGSVEGTDIAGRKVVLIADTPKVMTDGNWRVGVFVDD GASEEQFDKLVQVFGGQLGGPMAGLAPLIGEMLGVQRAAIDIEDDGLLHSVRVGDEIDFQIQDIVPFGVETGEPVRFAGM FHPVGSDLVMAEAKRTRINAFGITYEGKTGLSKSSFTWAA >Mature_199_residues TWNLAGSYSETCSCELMCPCNMSFDHGATYDFCRVTLAFNVHEGSVEGTDIAGRKVVLIADTPKVMTDGNWRVGVFVDDG ASEEQFDKLVQVFGGQLGGPMAGLAPLIGEMLGVQRAAIDIEDDGLLHSVRVGDEIDFQIQDIVPFGVETGEPVRFAGMF HPVGSDLVMAEAKRTRINAFGITYEGKTGLSKSSFTWAA
Specific function: Unknown
COG id: COG5588
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21553; Mature: 21421
Theoretical pI: Translated: 4.26; Mature: 4.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTWNLAGSYSETCSCELMCPCNMSFDHGATYDFCRVTLAFNVHEGSVEGTDIAGRKVVLI CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEE ADTPKVMTDGNWRVGVFVDDGASEEQFDKLVQVFGGQLGGPMAGLAPLIGEMLGVQRAAI ECCCCEEECCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEE DIEDDGLLHSVRVGDEIDFQIQDIVPFGVETGEPVRFAGMFHPVGSDLVMAEAKRTRINA EECCCCEEEEEECCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEECCCCEEEEE FGITYEGKTGLSKSSFTWAA EEEEECCCCCCCCCCEEECC >Mature Secondary Structure TWNLAGSYSETCSCELMCPCNMSFDHGATYDFCRVTLAFNVHEGSVEGTDIAGRKVVLI CCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEE ADTPKVMTDGNWRVGVFVDDGASEEQFDKLVQVFGGQLGGPMAGLAPLIGEMLGVQRAAI ECCCCEEECCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEE DIEDDGLLHSVRVGDEIDFQIQDIVPFGVETGEPVRFAGMFHPVGSDLVMAEAKRTRINA EECCCCEEEEEECCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEECCCCEEEEE FGITYEGKTGLSKSSFTWAA EEEEECCCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA