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The map label for this gene is 119716348

Identifier: 119716348

GI number: 119716348

Start: 2262345

End: 2263613

Strand: Direct

Name: 119716348

Synonym: Noca_2117

Alternate gene names: NA

Gene position: 2262345-2263613 (Clockwise)

Preceding gene: 119716347

Following gene: 119716349

Centisome position: 45.38

GC content: 74.86

Gene sequence:

>1269_bases
ATGGCCGGGAGCAGTGGAGGGAGCAGCGCAGCGACAGGGGAGGCGATCACCGCCGCGTGGCGTGCGGAGTCCGCGCGCCT
GGTCGGTGCGCTGACCCGGATGACGCGGGACCTCGGCCTCGCCGAGGACCTGGCCCAGGACGCGCTGGTGAGCGCGTTGG
AGCAGTGGCCGTCCCGCGGCATCCCCGCCAACCCGGCGGCGTGGCTGATGACCACGGCGAAGCGCCGCGCCGTCGACGGG
TTCCGGCGGGCCGAGACCTTGCGCCGCAAGACCGAGGAGCTCGGTCACGGCCTGAGCGAGGAGGACGCGATGCCGGACCT
CAGCGCGCAGGTGGACTTCATCGAGGACGACGTCCTCCGGCTGATCTTCCTGTCCTGCCACCCACGGCTGACCCCGGAGT
CGCGGGCCGCCCTGACGCTCCGCCTGGTCGGCGGACTGTCGACCGCGGAGATCGCCCGTGGCTTCCTGGCTGCCGAGTCG
GCGATCGGCCAGCGCATCTCGCGCGCCAAGAGGACGCTCAGCGAGGTGCGTGCCGAGTTCGAGCTCCCGGTGGGTGCCGA
ACGCACCGCCCGGCTCGAGGACGTGATGGCCGTCGTCTACCTGATCTTCAACGAGGGCTACACCGCCACGGCGGGCGAGG
ACTGGATGCGCCCCGAGCTGACCGGCGAGGCGATCAGGCTGGCGCGGATGCTGGCCGAGCTGATGCCGGACGAGCCCGAG
GCGCACGGGTTGCAGGCGCTGCTGGAGCTGCAGGCCTCCCGGGGGCCGGCGCGGGTCGACGCCGAGGGCCGGCCGGTGCT
CCTCGACGACCAGGACCGCAGCAGCTGGGACGCCCTGCTCATCCGTCGGGGGCTGGCCGCGCTGGAGCGCGCCGAGGTGC
TCGCCCGCGGCGGAGCCCCGGTCGGCCGGTACTACCTGCAGGCCGCGATCGCGGCGCAGCACGCCCGGGCGGCGAGCAGC
GAGCACACCGACTGGCGGGCGATCGCGGCGCTGTACGACGTGCTCGCCGAGGCCGCGCCCGGCCCGGTGGTGGAGGTCAA
CCGCGCGGTCGCCCACGGGCGGGCCTTCGGTCCGGCCGCCGGGCTCGCCGTACTCGATGGCCTGCCGGAGGGTGCGCTCG
CCGGATCGCACCTGCTGCCCAGCGTGCGTGGCGACCTGCTCGCGCGGGCGGGACGCCACCCCGAGGCGGCTGCATCGTTC
CGCGAGGCAGCCTCGCTCACCCGCAACGAGAGCGAGCGGGCGCTGCTACTGCGCCGGGCAGAGGAGTGA

Upstream 100 bases:

>100_bases
AGTGCAGCATGGTCGCGACGCTGCGCCAGATCTCGGACGCGCCGCCGGAGGCTTCCGGCGCCTGATGATCCTGGCGTGCG
GCGAGCCCTAGGCTCGCCGC

Downstream 100 bases:

>100_bases
GCCACGACAGCCGATCGGGTCGGCGATACTCCCGCCGCTGGTGGGTACCGGAGGAGTGGTCCGGCGCCCCCGAACTAGGC
TGAAAGGACGCAGAGATGAC

Product: sigma-70 region 2 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MAGSSGGSSAATGEAITAAWRAESARLVGALTRMTRDLGLAEDLAQDALVSALEQWPSRGIPANPAAWLMTTAKRRAVDG
FRRAETLRRKTEELGHGLSEEDAMPDLSAQVDFIEDDVLRLIFLSCHPRLTPESRAALTLRLVGGLSTAEIARGFLAAES
AIGQRISRAKRTLSEVRAEFELPVGAERTARLEDVMAVVYLIFNEGYTATAGEDWMRPELTGEAIRLARMLAELMPDEPE
AHGLQALLELQASRGPARVDAEGRPVLLDDQDRSSWDALLIRRGLAALERAEVLARGGAPVGRYYLQAAIAAQHARAASS
EHTDWRAIAALYDVLAEAAPGPVVEVNRAVAHGRAFGPAAGLAVLDGLPEGALAGSHLLPSVRGDLLARAGRHPEAAASF
REAASLTRNESERALLLRRAEE

Sequences:

>Translated_422_residues
MAGSSGGSSAATGEAITAAWRAESARLVGALTRMTRDLGLAEDLAQDALVSALEQWPSRGIPANPAAWLMTTAKRRAVDG
FRRAETLRRKTEELGHGLSEEDAMPDLSAQVDFIEDDVLRLIFLSCHPRLTPESRAALTLRLVGGLSTAEIARGFLAAES
AIGQRISRAKRTLSEVRAEFELPVGAERTARLEDVMAVVYLIFNEGYTATAGEDWMRPELTGEAIRLARMLAELMPDEPE
AHGLQALLELQASRGPARVDAEGRPVLLDDQDRSSWDALLIRRGLAALERAEVLARGGAPVGRYYLQAAIAAQHARAASS
EHTDWRAIAALYDVLAEAAPGPVVEVNRAVAHGRAFGPAAGLAVLDGLPEGALAGSHLLPSVRGDLLARAGRHPEAAASF
REAASLTRNESERALLLRRAEE
>Mature_421_residues
AGSSGGSSAATGEAITAAWRAESARLVGALTRMTRDLGLAEDLAQDALVSALEQWPSRGIPANPAAWLMTTAKRRAVDGF
RRAETLRRKTEELGHGLSEEDAMPDLSAQVDFIEDDVLRLIFLSCHPRLTPESRAALTLRLVGGLSTAEIARGFLAAESA
IGQRISRAKRTLSEVRAEFELPVGAERTARLEDVMAVVYLIFNEGYTATAGEDWMRPELTGEAIRLARMLAELMPDEPEA
HGLQALLELQASRGPARVDAEGRPVLLDDQDRSSWDALLIRRGLAALERAEVLARGGAPVGRYYLQAAIAAQHARAASSE
HTDWRAIAALYDVLAEAAPGPVVEVNRAVAHGRAFGPAAGLAVLDGLPEGALAGSHLLPSVRGDLLARAGRHPEAAASFR
EAASLTRNESERALLLRRAEE

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 45170; Mature: 45038

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSSGGSSAATGEAITAAWRAESARLVGALTRMTRDLGLAEDLAQDALVSALEQWPSRG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
IPANPAAWLMTTAKRRAVDGFRRAETLRRKTEELGHGLSEEDAMPDLSAQVDFIEDDVLR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHH
LIFLSCHPRLTPESRAALTLRLVGGLSTAEIARGFLAAESAIGQRISRAKRTLSEVRAEF
HHHHHCCCCCCCCCHHEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELPVGAERTARLEDVMAVVYLIFNEGYTATAGEDWMRPELTGEAIRLARMLAELMPDEPE
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCH
AHGLQALLELQASRGPARVDAEGRPVLLDDQDRSSWDALLIRRGLAALERAEVLARGGAP
HHHHHHHHHHHHCCCCCEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH
VGRYYLQAAIAAQHARAASSEHTDWRAIAALYDVLAEAAPGPVVEVNRAVAHGRAFGPAA
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHH
GLAVLDGLPEGALAGSHLLPSVRGDLLARAGRHPEAAASFREAASLTRNESERALLLRRA
HHHHHHCCCCCCCCCHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHC
EE
CC
>Mature Secondary Structure 
AGSSGGSSAATGEAITAAWRAESARLVGALTRMTRDLGLAEDLAQDALVSALEQWPSRG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
IPANPAAWLMTTAKRRAVDGFRRAETLRRKTEELGHGLSEEDAMPDLSAQVDFIEDDVLR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHH
LIFLSCHPRLTPESRAALTLRLVGGLSTAEIARGFLAAESAIGQRISRAKRTLSEVRAEF
HHHHHCCCCCCCCCHHEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELPVGAERTARLEDVMAVVYLIFNEGYTATAGEDWMRPELTGEAIRLARMLAELMPDEPE
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCH
AHGLQALLELQASRGPARVDAEGRPVLLDDQDRSSWDALLIRRGLAALERAEVLARGGAP
HHHHHHHHHHHHCCCCCEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH
VGRYYLQAAIAAQHARAASSEHTDWRAIAALYDVLAEAAPGPVVEVNRAVAHGRAFGPAA
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHH
GLAVLDGLPEGALAGSHLLPSVRGDLLARAGRHPEAAASFREAASLTRNESERALLLRRA
HHHHHHCCCCCCCCCHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHC
EE
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]