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The map label for this gene is rpoE [H]

Identifier: 119716321

GI number: 119716321

Start: 2233631

End: 2234194

Strand: Reverse

Name: rpoE [H]

Synonym: Noca_2090

Alternate gene names: 119716321

Gene position: 2234194-2233631 (Counterclockwise)

Preceding gene: 119716325

Following gene: 119716320

Centisome position: 44.81

GC content: 70.21

Gene sequence:

>564_bases
ATGAGCATCCCGCCCGGGCCCGACGAGGCCGCCCGTCGGCGAGCCTTCCGCGACTTCGTGGAGCCCGAGATCGAGTTGAT
GCTGCGCGTCGCGCGAAGCATGACGTCCGGGGACGCCGATGCCGAGGACCTGGTGCAGGAGTCACTCCTGCGGGCGTACC
GCGGGCTGCACCGCTTCGACGGCAGCCACCCCCGCGCCTGGCTGCTCACCATCCTGCGCAACACGAACGCCAACCTGCAC
CGACGGCGGCGGCCGATCACCATCGACGACGCCCAGCTCCATGCGGCGTCGCGCCCCGCGTTCGGGCACTCCGAGCTGCC
GAGTGCCGAGCAGTCCTTCTTGGACGAGGAGCTCGACGAGAAGCTTCACAACGCGATCGCCGCACTCGACCCGCGATTCC
GGGCCGCCCTGATCCTGGTCGACCTGCACGATCTCAGCTATGCCGAGGCCGCCGCAGTACTCGATGTCCCCGTCGGGACG
GTGATGTCCCGACTGAGCCGCGCCCGCGATCGGCTGCGGCGGAGTCTCGGCCCCACCACCCTGTCCCGAGGAGGGCTGTC
ATGA

Upstream 100 bases:

>100_bases
ACGTGAGGATGAGGTTGTCAACGCCTGACCGGCCGGTCAGGTCAGCGGCGGCACCGGTCCGCCCGGGAAGATCTGCGCCG
CGTCACCGGGTTCCCCCGGC

Downstream 100 bases:

>100_bases
GCGGAACCCTGAGGCAACTGCTGAGCTGCCACTGGTCGGCGCGACGGATCCAGCGCTACCTCGACGCGGACCCGTCGGCT
CCTCTCACCCCAGGCGAGGT

Product: sigma-70 region 2 domain-containing protein

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSIPPGPDEAARRRAFRDFVEPEIELMLRVARSMTSGDADAEDLVQESLLRAYRGLHRFDGSHPRAWLLTILRNTNANLH
RRRRPITIDDAQLHAASRPAFGHSELPSAEQSFLDEELDEKLHNAIAALDPRFRAALILVDLHDLSYAEAAAVLDVPVGT
VMSRLSRARDRLRRSLGPTTLSRGGLS

Sequences:

>Translated_187_residues
MSIPPGPDEAARRRAFRDFVEPEIELMLRVARSMTSGDADAEDLVQESLLRAYRGLHRFDGSHPRAWLLTILRNTNANLH
RRRRPITIDDAQLHAASRPAFGHSELPSAEQSFLDEELDEKLHNAIAALDPRFRAALILVDLHDLSYAEAAAVLDVPVGT
VMSRLSRARDRLRRSLGPTTLSRGGLS
>Mature_186_residues
SIPPGPDEAARRRAFRDFVEPEIELMLRVARSMTSGDADAEDLVQESLLRAYRGLHRFDGSHPRAWLLTILRNTNANLHR
RRRPITIDDAQLHAASRPAFGHSELPSAEQSFLDEELDEKLHNAIAALDPRFRAALILVDLHDLSYAEAAAVLDVPVGTV
MSRLSRARDRLRRSLGPTTLSRGGLS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=153, Percent_Identity=37.9084967320261, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20877; Mature: 20746

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIPPGPDEAARRRAFRDFVEPEIELMLRVARSMTSGDADAEDLVQESLLRAYRGLHRFD
CCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
GSHPRAWLLTILRNTNANLHRRRRPITIDDAQLHAASRPAFGHSELPSAEQSFLDEELDE
CCCCHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
KLHNAIAALDPRFRAALILVDLHDLSYAEAAAVLDVPVGTVMSRLSRARDRLRRSLGPTT
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC
LSRGGLS
CCCCCCC
>Mature Secondary Structure 
SIPPGPDEAARRRAFRDFVEPEIELMLRVARSMTSGDADAEDLVQESLLRAYRGLHRFD
CCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
GSHPRAWLLTILRNTNANLHRRRRPITIDDAQLHAASRPAFGHSELPSAEQSFLDEELDE
CCCCHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
KLHNAIAALDPRFRAALILVDLHDLSYAEAAAVLDVPVGTVMSRLSRARDRLRRSLGPTT
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC
LSRGGLS
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]