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The map label for this gene is ydjX [C]

Identifier: 119716303

GI number: 119716303

Start: 2217186

End: 2217863

Strand: Direct

Name: ydjX [C]

Synonym: Noca_2072

Alternate gene names: 119716303

Gene position: 2217186-2217863 (Clockwise)

Preceding gene: 119716302

Following gene: 119716312

Centisome position: 44.47

GC content: 73.75

Gene sequence:

>678_bases
GTGAGCAGGGGCGTTTGGCTGCGCCTCGGGCTGCTCGTCAGCCTGATCGGGCTGCTGGCGGCGGCGACACTCCTGACCGA
CGCGCCGACCATGAGCCAGATCCATGATTGGACGGATGCGGCCGGTTGGGCGGGGGTGTTCGTCTTCGTGCTGGTCTACG
TCGTCTTCGCGCTGATCCCGGTCCCGAAGGCGGTGCTCACCTTGGCCGCGGGGGCTCTCTACGGTGTGCCCCTGGGCGCC
GCCCTCGCCCTGGTCGGCGCGACCACGGGGGCAGGCGTGGCCTTCGGCGCGGCTCGGCTCCTGGGCCGGGACGCGGTGAC
TCGGCTCGAGGGACGACGGCTGGCCTGGCTCGACGACGTGCTCGCGCGCCGCGGCTTCCTGGCGGTCCTGGGGCTGCGGC
TGGTGCCGCTGGTGCCCTACACCGTCCTGAACTACGGCGCGGGCGTGACCGGGGTCCGCTGGCGGTCCTACCTGCTCGCC
ACGATCCTCGGCATGAGCCCCGGCGCGACGCTCTACGCGACCCTGGGCGCACATAGCGACGAGCCCGCGTCCTGGCCGTT
CGTCCTGGCGGGCGCGGGGCTGGCGGTGCTCTCCGTGCTCACCGCTGGGGTGGCCTGGTGGCGGCCACGGAGGGGAACGA
CGAGTGGAGCCGCCGTCGCTCCGGCGGACCGCGAGTGA

Upstream 100 bases:

>100_bases
TGGTCGCGCACCACCCGGTCGAGCTGCCCGTACTGGCGGGGAGCACGGTGACGATCGGGCTCGACCCCGGCGCCGGCTCC
GTCTTCGCGGTGGGCCCCGG

Downstream 100 bases:

>100_bases
CCCGGCGCGACCGTACGCCCGCCGCGGGCCGGGCGTCCGACCGGGCCACCACGTCCGAGGAGATTCCCATCCAGCAGAGC
GTCACCGTGTCCGTCGACCT

Product: integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MSRGVWLRLGLLVSLIGLLAAATLLTDAPTMSQIHDWTDAAGWAGVFVFVLVYVVFALIPVPKAVLTLAAGALYGVPLGA
ALALVGATTGAGVAFGAARLLGRDAVTRLEGRRLAWLDDVLARRGFLAVLGLRLVPLVPYTVLNYGAGVTGVRWRSYLLA
TILGMSPGATLYATLGAHSDEPASWPFVLAGAGLAVLSVLTAGVAWWRPRRGTTSGAAVAPADRE

Sequences:

>Translated_225_residues
MSRGVWLRLGLLVSLIGLLAAATLLTDAPTMSQIHDWTDAAGWAGVFVFVLVYVVFALIPVPKAVLTLAAGALYGVPLGA
ALALVGATTGAGVAFGAARLLGRDAVTRLEGRRLAWLDDVLARRGFLAVLGLRLVPLVPYTVLNYGAGVTGVRWRSYLLA
TILGMSPGATLYATLGAHSDEPASWPFVLAGAGLAVLSVLTAGVAWWRPRRGTTSGAAVAPADRE
>Mature_224_residues
SRGVWLRLGLLVSLIGLLAAATLLTDAPTMSQIHDWTDAAGWAGVFVFVLVYVVFALIPVPKAVLTLAAGALYGVPLGAA
LALVGATTGAGVAFGAARLLGRDAVTRLEGRRLAWLDDVLARRGFLAVLGLRLVPLVPYTVLNYGAGVTGVRWRSYLLAT
ILGMSPGATLYATLGAHSDEPASWPFVLAGAGLAVLSVLTAGVAWWRPRRGTTSGAAVAPADRE

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Escherichia coli, GI87081964, Length=203, Percent_Identity=28.0788177339901, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1788049, Length=222, Percent_Identity=30.6306306306306, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 23328; Mature: 23196

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRGVWLRLGLLVSLIGLLAAATLLTDAPTMSQIHDWTDAAGWAGVFVFVLVYVVFALIP
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
VPKAVLTLAAGALYGVPLGAALALVGATTGAGVAFGAARLLGRDAVTRLEGRRLAWLDDV
CHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LARRGFLAVLGLRLVPLVPYTVLNYGAGVTGVRWRSYLLATILGMSPGATLYATLGAHSD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
EPASWPFVLAGAGLAVLSVLTAGVAWWRPRRGTTSGAAVAPADRE
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SRGVWLRLGLLVSLIGLLAAATLLTDAPTMSQIHDWTDAAGWAGVFVFVLVYVVFALIP
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
VPKAVLTLAAGALYGVPLGAALALVGATTGAGVAFGAARLLGRDAVTRLEGRRLAWLDDV
CHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LARRGFLAVLGLRLVPLVPYTVLNYGAGVTGVRWRSYLLATILGMSPGATLYATLGAHSD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
EPASWPFVLAGAGLAVLSVLTAGVAWWRPRRGTTSGAAVAPADRE
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]