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The map label for this gene is IS1086 [H]

Identifier: 119716262

GI number: 119716262

Start: 2174177

End: 2175616

Strand: Reverse

Name: IS1086 [H]

Synonym: Noca_2030

Alternate gene names: 119716262

Gene position: 2175616-2174177 (Counterclockwise)

Preceding gene: 119716263

Following gene: 119716261

Centisome position: 43.64

GC content: 68.47

Gene sequence:

>1440_bases
ATGGCGACGAAGGACTGGAGCAAGAAGACCAGCGATGCGCCGGAGGGGCTTCGTCGGCAGTGGCGTGCTGATCGGGCGCT
GAGGCCGGCGATGCGCTCGCCCGGGCGACCGGACCCGTCGCGGGTGGTGCAGCGACAGTTCTGGCGGCAGATCGCCACGG
GCGTCACGACGGTGGAGGCGTCGATGGCCGTGGGCGTGTCGTGGCCGGTCGGTGCTCGCTGGTTTCGCCACGCTGGCGGC
ATGCCGCCGATCTCGCTGGCCGAGCCCACCGGCCGCCACCTGACCTTCGAGGAACGCGAGGAGATCGCGATCCTGCGCGC
CAAGGACAAGGGCGTGCGCGAGATAGCCCGTGCGATCGGGCGTGACCCGGGGACCGTCTCACGCGAACTTCGTCGCAATG
CAGCGACTCGTGGCGGCAAGCAGGAGTACCGCGCTGGCGTAGCGCAGTGGAAGGCACAGCAGGCGGCGAAGCGTCCCAAG
ACCGCGAAGCTCGTGACCAACGAGCGGTTGCGTGAGTACGTGCAGGATCGGCTCGCCGGCAACGTCCGCCGTCCCGACGG
CACGATCGTGCCGGGTCCGACACCGCCGCCGTGGAAGGGCCTGAACAAGCCGCATCGCCGGGACAGGCGGTGGTCGACGG
CTTGGAGCCCGGAGCAGATCGCCCAGCGCCTGAAGGTCGAGTTCCCCGATGATGAGTCCATGCGCATCAGCCACGAGGCG
ATCTACCAGTCGCTGTTCATCGAGGGCCGCGGTGCGCTCAAGCGCGAACTGGTCACCTGTCTGCGCACCGGGCGTGCGCT
GCGGGAGCCGCGGGCCCGGTCACGGAACAAGGCACAGGGGCACGTGACCGCCGATGTCGTTCTCAGCGAGCGCCCCGCTG
AGGCAGACGACCGGGCCGTCCCTGGCCACTGGGAGGGCGATCTGATCATCGGCACGGGTCGGTCTGCGATCGGCACCCTC
GTCGAGCGCAGCAGTCGCTCAACGCTCCTGGTCCATCTGCCGCGACTGGAGGGCTGGGGTGAGAAGCCGTACGTCAAGAA
CGGGCCATCACTCGGTGGCTACGGGGCCGTCGCGATGAACACCGCGCTGACCGCGTCGATGACCAAGCTGCCCGAGCAGC
TGCGCAAGACCCTGACGTGGGACCGTGGCAAGGAACTCTCGGGCCACGCGTTGTTCGCGGTGGCGACCGGCACGAAGGTG
TTCTTCGCCGACCCGCACTCGCCGTGGCAGCGACCGAGCAACGAGAACACCAACGGCCTGTTGCGCCAATACTTCCCCAA
GGGCACCGACCTGTCGCGCTGGTCCGCCGAGGACCTGGAGGCCGTCGCCTATGCGCTCAACAACCGGCCCCGCAAGGTCC
TCGGGTGGAAGACACCCGCTGAGGTCTTCGAGGAGCAACTACGCTCCCTTCAACAACCCGGTGTTGCATCGACCAGTTGA

Upstream 100 bases:

>100_bases
ACCCGATCGTGCCCGGCGAACTGATCGGCCACGCCGACGCCGGATCGCAAGGCGAAATCAACCGGTCGTCGCAACACCTT
GATTTCGGAGGTGTTCGAGG

Downstream 100 bases:

>100_bases
ACTCGCCCAATACACCTCGATCACCTTCACCGAACACCTCGCCGAGGAAGGCATCCGGCCCTCGATCGGGACGGTTGCCG
ATGCCTATGACAACGCCCTG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 479; Mature: 478

Protein sequence:

>479_residues
MATKDWSKKTSDAPEGLRRQWRADRALRPAMRSPGRPDPSRVVQRQFWRQIATGVTTVEASMAVGVSWPVGARWFRHAGG
MPPISLAEPTGRHLTFEEREEIAILRAKDKGVREIARAIGRDPGTVSRELRRNAATRGGKQEYRAGVAQWKAQQAAKRPK
TAKLVTNERLREYVQDRLAGNVRRPDGTIVPGPTPPPWKGLNKPHRRDRRWSTAWSPEQIAQRLKVEFPDDESMRISHEA
IYQSLFIEGRGALKRELVTCLRTGRALREPRARSRNKAQGHVTADVVLSERPAEADDRAVPGHWEGDLIIGTGRSAIGTL
VERSSRSTLLVHLPRLEGWGEKPYVKNGPSLGGYGAVAMNTALTASMTKLPEQLRKTLTWDRGKELSGHALFAVATGTKV
FFADPHSPWQRPSNENTNGLLRQYFPKGTDLSRWSAEDLEAVAYALNNRPRKVLGWKTPAEVFEEQLRSLQQPGVASTS

Sequences:

>Translated_479_residues
MATKDWSKKTSDAPEGLRRQWRADRALRPAMRSPGRPDPSRVVQRQFWRQIATGVTTVEASMAVGVSWPVGARWFRHAGG
MPPISLAEPTGRHLTFEEREEIAILRAKDKGVREIARAIGRDPGTVSRELRRNAATRGGKQEYRAGVAQWKAQQAAKRPK
TAKLVTNERLREYVQDRLAGNVRRPDGTIVPGPTPPPWKGLNKPHRRDRRWSTAWSPEQIAQRLKVEFPDDESMRISHEA
IYQSLFIEGRGALKRELVTCLRTGRALREPRARSRNKAQGHVTADVVLSERPAEADDRAVPGHWEGDLIIGTGRSAIGTL
VERSSRSTLLVHLPRLEGWGEKPYVKNGPSLGGYGAVAMNTALTASMTKLPEQLRKTLTWDRGKELSGHALFAVATGTKV
FFADPHSPWQRPSNENTNGLLRQYFPKGTDLSRWSAEDLEAVAYALNNRPRKVLGWKTPAEVFEEQLRSLQQPGVASTS
>Mature_478_residues
ATKDWSKKTSDAPEGLRRQWRADRALRPAMRSPGRPDPSRVVQRQFWRQIATGVTTVEASMAVGVSWPVGARWFRHAGGM
PPISLAEPTGRHLTFEEREEIAILRAKDKGVREIARAIGRDPGTVSRELRRNAATRGGKQEYRAGVAQWKAQQAAKRPKT
AKLVTNERLREYVQDRLAGNVRRPDGTIVPGPTPPPWKGLNKPHRRDRRWSTAWSPEQIAQRLKVEFPDDESMRISHEAI
YQSLFIEGRGALKRELVTCLRTGRALREPRARSRNKAQGHVTADVVLSERPAEADDRAVPGHWEGDLIIGTGRSAIGTLV
ERSSRSTLLVHLPRLEGWGEKPYVKNGPSLGGYGAVAMNTALTASMTKLPEQLRKTLTWDRGKELSGHALFAVATGTKVF
FADPHSPWQRPSNENTNGLLRQYFPKGTDLSRWSAEDLEAVAYALNNRPRKVLGWKTPAEVFEEQLRSLQQPGVASTS

Specific function: Required for the transposition of the insertion element (Potential) [H]

COG id: COG2826

COG function: function code L; Transposase and inactivated derivatives, IS30 family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786450, Length=394, Percent_Identity=39.5939086294416, Blast_Score=253, Evalue=2e-68,
Organism=Escherichia coli, GI1790736, Length=394, Percent_Identity=39.3401015228426, Blast_Score=252, Evalue=3e-68,
Organism=Escherichia coli, GI1787671, Length=394, Percent_Identity=39.3401015228426, Blast_Score=252, Evalue=3e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR001598 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 53567; Mature: 53436

Theoretical pI: Translated: 11.23; Mature: 11.23

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKDWSKKTSDAPEGLRRQWRADRALRPAMRSPGRPDPSRVVQRQFWRQIATGVTTVEA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHEEH
SMAVGVSWPVGARWFRHAGGMPPISLAEPTGRHLTFEEREEIAILRAKDKGVREIARAIG
HHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCEEEEECCCCCHHHHHHHHC
RDPGTVSRELRRNAATRGGKQEYRAGVAQWKAQQAAKRPKTAKLVTNERLREYVQDRLAG
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
NVRRPDGTIVPGPTPPPWKGLNKPHRRDRRWSTAWSPEQIAQRLKVEFPDDESMRISHEA
CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHH
IYQSLFIEGRGALKRELVTCLRTGRALREPRARSRNKAQGHVTADVVLSERPAEADDRAV
HHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCEEEEEEECCCCCCCCCCCC
PGHWEGDLIIGTGRSAIGTLVERSSRSTLLVHLPRLEGWGEKPYVKNGPSLGGYGAVAMN
CCCCCCCEEEECCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
TALTASMTKLPEQLRKTLTWDRGKELSGHALFAVATGTKVFFADPHSPWQRPSNENTNGL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCHHHH
LRQYFPKGTDLSRWSAEDLEAVAYALNNRPRKVLGWKTPAEVFEEQLRSLQQPGVASTS
HHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ATKDWSKKTSDAPEGLRRQWRADRALRPAMRSPGRPDPSRVVQRQFWRQIATGVTTVEA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHEEH
SMAVGVSWPVGARWFRHAGGMPPISLAEPTGRHLTFEEREEIAILRAKDKGVREIARAIG
HHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCEEEEECCCCCHHHHHHHHC
RDPGTVSRELRRNAATRGGKQEYRAGVAQWKAQQAAKRPKTAKLVTNERLREYVQDRLAG
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
NVRRPDGTIVPGPTPPPWKGLNKPHRRDRRWSTAWSPEQIAQRLKVEFPDDESMRISHEA
CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHH
IYQSLFIEGRGALKRELVTCLRTGRALREPRARSRNKAQGHVTADVVLSERPAEADDRAV
HHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCEEEEEEECCCCCCCCCCCC
PGHWEGDLIIGTGRSAIGTLVERSSRSTLLVHLPRLEGWGEKPYVKNGPSLGGYGAVAMN
CCCCCCCEEEECCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
TALTASMTKLPEQLRKTLTWDRGKELSGHALFAVATGTKVFFADPHSPWQRPSNENTNGL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCHHHH
LRQYFPKGTDLSRWSAEDLEAVAYALNNRPRKVLGWKTPAEVFEEQLRSLQQPGVASTS
HHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1334071 [H]