| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119716235
Identifier: 119716235
GI number: 119716235
Start: 2145205
End: 2145753
Strand: Reverse
Name: 119716235
Synonym: Noca_2003
Alternate gene names: NA
Gene position: 2145753-2145205 (Counterclockwise)
Preceding gene: 119716236
Following gene: 119716234
Centisome position: 43.04
GC content: 73.41
Gene sequence:
>549_bases ATGACGAACCCTGCTGCGCGCCGCCCCTGGACGCGCACCCTGATGCCCGCGCTGGCGCTCGCGCTCGCGTTGCCCCTGCT CACCGGCTGCGGTGAGGACGAGGCCCCCGCCGCGGCCGCGGAGGCCGGCGCCCTGACGATCGAGGACCCCTGGGTCCGGG CCACCACCGGCACCGAGGACCCGACCATGACGGCCGCGTTCCTGGTCATCGACAACGAGACCGAGGAGGACGTCACCCTC GAGAGCGCCACGTCCCCGGCGGCGCCGATGGTCCAGATCCACGAGATGGCCGAGGTGGACGGCGAGATGGTGATGCGCGA GGCCGAGGACGGCGTCCTGGTCCGCGCGGGCGGTGGCCAGCTGCTGCAGCCCGGCGGCTACCACCTGATGCTGATGGACC TCGAGGACGAGCTGGCCGCCGGCGCCGAGGTCGACCTCGCGCTGACCTTCTCCGACGGCACCACCCTGGAGGTCACCGCG CCGGTGAAGGAGTTCACCGAGGACGGCGGCCACTACCACGCGCCCGGCACCGGGGAGCACGAGCACTGA
Upstream 100 bases:
>100_bases CGCTGAGTCCCACGGACCCGCCCCACGGCGCCGGTCCGGCGCACCCGCGCGCCCATCCCCAGACACCCCAGACACCCCAG ACACCGGGAGAGAAGTACCC
Downstream 100 bases:
>100_bases TGGCCGGATCCGAGACATCCGCCCGGTCCGGATTCGGCCGGCGGCGGTTCCTCGGGTACGCCGGGTCAGCGGTCGCGGGT GCGGCCGCCGGCACGGCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 182; Mature: 181
Protein sequence:
>182_residues MTNPAARRPWTRTLMPALALALALPLLTGCGEDEAPAAAAEAGALTIEDPWVRATTGTEDPTMTAAFLVIDNETEEDVTL ESATSPAAPMVQIHEMAEVDGEMVMREAEDGVLVRAGGGQLLQPGGYHLMLMDLEDELAAGAEVDLALTFSDGTTLEVTA PVKEFTEDGGHYHAPGTGEHEH
Sequences:
>Translated_182_residues MTNPAARRPWTRTLMPALALALALPLLTGCGEDEAPAAAAEAGALTIEDPWVRATTGTEDPTMTAAFLVIDNETEEDVTL ESATSPAAPMVQIHEMAEVDGEMVMREAEDGVLVRAGGGQLLQPGGYHLMLMDLEDELAAGAEVDLALTFSDGTTLEVTA PVKEFTEDGGHYHAPGTGEHEH >Mature_181_residues TNPAARRPWTRTLMPALALALALPLLTGCGEDEAPAAAAEAGALTIEDPWVRATTGTEDPTMTAAFLVIDNETEEDVTLE SATSPAAPMVQIHEMAEVDGEMVMREAEDGVLVRAGGGQLLQPGGYHLMLMDLEDELAAGAEVDLALTFSDGTTLEVTAP VKEFTEDGGHYHAPGTGEHEH
Specific function: Unknown
COG id: COG2847
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007410 [H]
Pfam domain/function: PF04314 DUF461 [H]
EC number: NA
Molecular weight: Translated: 19166; Mature: 19034
Theoretical pI: Translated: 3.84; Mature: 3.84
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNPAARRPWTRTLMPALALALALPLLTGCGEDEAPAAAAEAGALTIEDPWVRATTGTED CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCEEEECCCEEEEECCCCC PTMTAAFLVIDNETEEDVTLESATSPAAPMVQIHEMAEVDGEMVMREAEDGVLVRAGGGQ CCEEEEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHCCHHHEEEECCCCEEEEECCCC LLQPGGYHLMLMDLEDELAAGAEVDLALTFSDGTTLEVTAPVKEFTEDGGHYHAPGTGEH EECCCCCEEEEEECCHHHCCCCEEEEEEEECCCCEEEEECCHHHHHHCCCEECCCCCCCC EH CC >Mature Secondary Structure TNPAARRPWTRTLMPALALALALPLLTGCGEDEAPAAAAEAGALTIEDPWVRATTGTED CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCEEEECCCEEEEECCCCC PTMTAAFLVIDNETEEDVTLESATSPAAPMVQIHEMAEVDGEMVMREAEDGVLVRAGGGQ CCEEEEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHCCHHHEEEECCCCEEEEECCCC LLQPGGYHLMLMDLEDELAAGAEVDLALTFSDGTTLEVTAPVKEFTEDGGHYHAPGTGEH EECCCCCEEEEEECCHHHCCCCEEEEEEEECCCCEEEEECCHHHHHHCCCEECCCCCCCC EH CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA