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The map label for this gene is ccmF [H]

Identifier: 119716190

GI number: 119716190

Start: 2087984

End: 2089960

Strand: Direct

Name: ccmF [H]

Synonym: Noca_1958

Alternate gene names: 119716190

Gene position: 2087984-2089960 (Clockwise)

Preceding gene: 119716189

Following gene: 119716191

Centisome position: 41.88

GC content: 73.14

Gene sequence:

>1977_bases
ATGGCGCACCTCGGACAGCTCGGCCTGCTGCTGGCACTGGCGCTGGCGGCGTACGGCATGGTGGCCGCCTTCGCCGGCGC
CTCGCCCCGGCGCGCGGCCTGGCTGGAGAGCGCCCGGCTCGCGGCGTTCGCCGTGCTGCTCGTCGTCCTGGTCGTCAACG
GCGCCATGCTGATCGCGCTGCTGACCGACGACTTCGGCGTGCGCTACGTCGCCGAGAACTCCTCGACGACGACACCGGTG
TTCTTCAAGACCCTGTCCCTGTGGGCCTCCGACGACGGCTCCCTGCTGCTGTGGAACCTGGTGCTCGCCGGCTACGGCGC
GGCCGTCGCCTGGCGGTTCCGCACAGACCGTCCCGCCGGCTTCCCGGTGGCCCTCGGTGTGATGTTCCTCGTCCAGTCCT
TCTACCTGCTCCTGGTGAACGGGCCGTCACGACCGTTCGCCACCCTCGCGACGGCGCCTCTCGACGGACGAGGACCGGCG
CCGCTGCTGCAGAACCATCCCCTGATGGCCGTGCACCCGCCGTTCCTCTACCTCGGCTTCATCGGCTTCACCGTGCCCTT
CGCGTTCGCGATCGCCTCGCTGGTCAGCGGCTCGCAGCCGGACCGGTGGGTCGAGGTGATCCGCGGCTGGACCATCGCCG
TCTGGACCTTCCTCACCGTCGGGCTGGCGCTCGGCGCGCTCTGGTCGTACTCCGTCCTGGGCTGGGGCGGCTACTGGGCG
TGGGACCCGGTCGAGAACGTCGCCCTGTTGCCGTGGCTGGTCGCGACCGCGTTCCTCCACTCGGTGATGCTGCAGCGCCG
CAGCGGGATGGCGACGTTGTGGAACGTCGGCCTGGTGATCGGCGCCTTCGCCCTCACCACGTTCGGGACGTTCCTGACCC
GCGGCAGCGTGCTCACCTCGATCCACGCGTTCGCCGACTCCTCCGTCGGGCCGGCGTACCTCACCTTCCTCACGCTCGTG
CTCCTCGGCGGCTTCGGGCTGGTCGTGTGGCGGCTGCCGCTGCTGCGCTCCCCGGCCCGGATGGACTCCCTGCTGTCGCG
GGAGGCGGCGCTGGTCGGCAACAACGTGCTGCTGCTGGCCGCCACCGGCATCGTCCTGCTCGGCACCGTCTTCCCGATGG
TCGCCGAGGCCGTCTTCGACCAGCAGCTGACGGTCGGGCGGCCGTACTTCGAGTCCGCCGTCACCCCGGTCTTCCTCCTG
CTGCTCCTGCTGATGGGGGTCGGCCCGCTGCTGCCGTGGCGGCGGGGCACCCCCGGCCGGGCGTGGCAGCGGCTGCGGCT
GCCGGCGTCGGCCGCGGCGCTCGTCGCCGTCGTGCTCACGCTGGCCGGCGTCCGGTCCACGGGCGCCGTCGTCGGGCTCG
GCCTGGTGGCGCTGGTCGTCGTCGGCACCGGCCGGGAGCTGGTGCGCGGCGTCCGGGGCGGCGGAGGACCCCGACGGGTG
CTGCGCGGCAGCCGGCGGTACGGCGGGCTCCTGGTGCACGTCGGGATGGCGGTCCTCGCCGCGGGCGTGATCGCCTCCTC
GGCGCTCGGCCAGGAGGGTGAGGTCACCCTCGCGAAGGGCGAGACGGCCACGTTCGCCGGCCACGAGCTGCGCTACGAGG
GCCTGCAGACCGACCGGCAGCCGAACCGGACCGTGCTCACGGTCGCGCTCACCGTGTCCGGTGACGGCGACGAGCTGCGA
CTGGATCCCAGGCTCAACCTGTACCCCGCCGCGTCGGAGCCGATCGCCTCGCCCGCCATCGACCGCGGGCCGGTGTGGGA
CCTGTACACCTCGGTGATCTCACTGCAGGACAACGGCGACTCGGCGACCGTCCGGGTGCTGCACACGCCGGGCGTCAACT
GGCTCTGGCTCGGGGCGCTGTTGATGATCCTCGGTGGCCTGCTGGCCGGCTGGCCGCACCGCGTCCGGCGACGCCGCCCA
CCGGCGACGGCCGAAGGGCGGGTGCCGCCCGTGGTCGTGACGGGTGCGCGGCCATGA

Upstream 100 bases:

>100_bases
GAGGGAGCACTGGGCGCCGACCGGCTCTTCCACGCCGACACGCTGCTGGTGAAGCACGACGGCGAGTACCGCGCTCCCGA
CCCCACGAAGGGACCCTGAC

Downstream 100 bases:

>100_bases
GCGGCGGCGGGGTGCGCGGTGGCGGTCGGCGGCTGGTGCCGCTGGGTGGCCTCGCCGTCGGCGTGGCCCTGGTCGCGCTG
CTGCTGGCGCTCGGGCTCAC

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 658; Mature: 657

Protein sequence:

>658_residues
MAHLGQLGLLLALALAAYGMVAAFAGASPRRAAWLESARLAAFAVLLVVLVVNGAMLIALLTDDFGVRYVAENSSTTTPV
FFKTLSLWASDDGSLLLWNLVLAGYGAAVAWRFRTDRPAGFPVALGVMFLVQSFYLLLVNGPSRPFATLATAPLDGRGPA
PLLQNHPLMAVHPPFLYLGFIGFTVPFAFAIASLVSGSQPDRWVEVIRGWTIAVWTFLTVGLALGALWSYSVLGWGGYWA
WDPVENVALLPWLVATAFLHSVMLQRRSGMATLWNVGLVIGAFALTTFGTFLTRGSVLTSIHAFADSSVGPAYLTFLTLV
LLGGFGLVVWRLPLLRSPARMDSLLSREAALVGNNVLLLAATGIVLLGTVFPMVAEAVFDQQLTVGRPYFESAVTPVFLL
LLLLMGVGPLLPWRRGTPGRAWQRLRLPASAAALVAVVLTLAGVRSTGAVVGLGLVALVVVGTGRELVRGVRGGGGPRRV
LRGSRRYGGLLVHVGMAVLAAGVIASSALGQEGEVTLAKGETATFAGHELRYEGLQTDRQPNRTVLTVALTVSGDGDELR
LDPRLNLYPAASEPIASPAIDRGPVWDLYTSVISLQDNGDSATVRVLHTPGVNWLWLGALLMILGGLLAGWPHRVRRRRP
PATAEGRVPPVVVTGARP

Sequences:

>Translated_658_residues
MAHLGQLGLLLALALAAYGMVAAFAGASPRRAAWLESARLAAFAVLLVVLVVNGAMLIALLTDDFGVRYVAENSSTTTPV
FFKTLSLWASDDGSLLLWNLVLAGYGAAVAWRFRTDRPAGFPVALGVMFLVQSFYLLLVNGPSRPFATLATAPLDGRGPA
PLLQNHPLMAVHPPFLYLGFIGFTVPFAFAIASLVSGSQPDRWVEVIRGWTIAVWTFLTVGLALGALWSYSVLGWGGYWA
WDPVENVALLPWLVATAFLHSVMLQRRSGMATLWNVGLVIGAFALTTFGTFLTRGSVLTSIHAFADSSVGPAYLTFLTLV
LLGGFGLVVWRLPLLRSPARMDSLLSREAALVGNNVLLLAATGIVLLGTVFPMVAEAVFDQQLTVGRPYFESAVTPVFLL
LLLLMGVGPLLPWRRGTPGRAWQRLRLPASAAALVAVVLTLAGVRSTGAVVGLGLVALVVVGTGRELVRGVRGGGGPRRV
LRGSRRYGGLLVHVGMAVLAAGVIASSALGQEGEVTLAKGETATFAGHELRYEGLQTDRQPNRTVLTVALTVSGDGDELR
LDPRLNLYPAASEPIASPAIDRGPVWDLYTSVISLQDNGDSATVRVLHTPGVNWLWLGALLMILGGLLAGWPHRVRRRRP
PATAEGRVPPVVVTGARP
>Mature_657_residues
AHLGQLGLLLALALAAYGMVAAFAGASPRRAAWLESARLAAFAVLLVVLVVNGAMLIALLTDDFGVRYVAENSSTTTPVF
FKTLSLWASDDGSLLLWNLVLAGYGAAVAWRFRTDRPAGFPVALGVMFLVQSFYLLLVNGPSRPFATLATAPLDGRGPAP
LLQNHPLMAVHPPFLYLGFIGFTVPFAFAIASLVSGSQPDRWVEVIRGWTIAVWTFLTVGLALGALWSYSVLGWGGYWAW
DPVENVALLPWLVATAFLHSVMLQRRSGMATLWNVGLVIGAFALTTFGTFLTRGSVLTSIHAFADSSVGPAYLTFLTLVL
LGGFGLVVWRLPLLRSPARMDSLLSREAALVGNNVLLLAATGIVLLGTVFPMVAEAVFDQQLTVGRPYFESAVTPVFLLL
LLLMGVGPLLPWRRGTPGRAWQRLRLPASAAALVAVVLTLAGVRSTGAVVGLGLVALVVVGTGRELVRGVRGGGGPRRVL
RGSRRYGGLLVHVGMAVLAAGVIASSALGQEGEVTLAKGETATFAGHELRYEGLQTDRQPNRTVLTVALTVSGDGDELRL
DPRLNLYPAASEPIASPAIDRGPVWDLYTSVISLQDNGDSATVRVLHTPGVNWLWLGALLMILGGLLAGWPHRVRRRRPP
ATAEGRVPPVVVTGARP

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=653, Percent_Identity=36.1408882082695, Blast_Score=318, Evalue=9e-88,
Organism=Escherichia coli, GI1790511, Length=618, Percent_Identity=31.5533980582524, Blast_Score=221, Evalue=9e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 69919; Mature: 69788

Theoretical pI: Translated: 10.83; Mature: 10.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHLGQLGLLLALALAAYGMVAAFAGASPRRAAWLESARLAAFAVLLVVLVVNGAMLIAL
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
LTDDFGVRYVAENSSTTTPVFFKTLSLWASDDGSLLLWNLVLAGYGAAVAWRFRTDRPAG
EECCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCC
FPVALGVMFLVQSFYLLLVNGPSRPFATLATAPLDGRGPAPLLQNHPLMAVHPPFLYLGF
CHHHHHHHHHHHHHHEEEECCCCCCCHHEEECCCCCCCCCCHHHCCCEEEECCHHHHHHH
IGFTVPFAFAIASLVSGSQPDRWVEVIRGWTIAVWTFLTVGLALGALWSYSVLGWGGYWA
HHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEC
WDPVENVALLPWLVATAFLHSVMLQRRSGMATLWNVGLVIGAFALTTFGTFLTRGSVLTS
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
IHAFADSSVGPAYLTFLTLVLLGGFGLVVWRLPLLRSPARMDSLLSREAALVGNNVLLLA
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEH
ATGIVLLGTVFPMVAEAVFDQQLTVGRPYFESAVTPVFLLLLLLMGVGPLLPWRRGTPGR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
AWQRLRLPASAAALVAVVLTLAGVRSTGAVVGLGLVALVVVGTGRELVRGVRGGGGPRRV
HHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHH
LRGSRRYGGLLVHVGMAVLAAGVIASSALGQEGEVTLAKGETATFAGHELRYEGLQTDRQ
HCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEECCCHHEECCCCCCCC
PNRTVLTVALTVSGDGDELRLDPRLNLYPAASEPIASPAIDRGPVWDLYTSVISLQDNGD
CCCEEEEEEEEEECCCCEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHEEECCCC
SATVRVLHTPGVNWLWLGALLMILGGLLAGWPHRVRRRRPPATAEGRVPPVVVTGARP
CEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCEEEECCCC
>Mature Secondary Structure 
AHLGQLGLLLALALAAYGMVAAFAGASPRRAAWLESARLAAFAVLLVVLVVNGAMLIAL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
LTDDFGVRYVAENSSTTTPVFFKTLSLWASDDGSLLLWNLVLAGYGAAVAWRFRTDRPAG
EECCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCC
FPVALGVMFLVQSFYLLLVNGPSRPFATLATAPLDGRGPAPLLQNHPLMAVHPPFLYLGF
CHHHHHHHHHHHHHHEEEECCCCCCCHHEEECCCCCCCCCCHHHCCCEEEECCHHHHHHH
IGFTVPFAFAIASLVSGSQPDRWVEVIRGWTIAVWTFLTVGLALGALWSYSVLGWGGYWA
HHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEC
WDPVENVALLPWLVATAFLHSVMLQRRSGMATLWNVGLVIGAFALTTFGTFLTRGSVLTS
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
IHAFADSSVGPAYLTFLTLVLLGGFGLVVWRLPLLRSPARMDSLLSREAALVGNNVLLLA
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEH
ATGIVLLGTVFPMVAEAVFDQQLTVGRPYFESAVTPVFLLLLLLMGVGPLLPWRRGTPGR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
AWQRLRLPASAAALVAVVLTLAGVRSTGAVVGLGLVALVVVGTGRELVRGVRGGGGPRRV
HHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHH
LRGSRRYGGLLVHVGMAVLAAGVIASSALGQEGEVTLAKGETATFAGHELRYEGLQTDRQ
HCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEECCCHHEECCCCCCCC
PNRTVLTVALTVSGDGDELRLDPRLNLYPAASEPIASPAIDRGPVWDLYTSVISLQDNGD
CCCEEEEEEEEEECCCCEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHEEECCCC
SATVRVLHTPGVNWLWLGALLMILGGLLAGWPHRVRRRRPPATAEGRVPPVVVTGARP
CEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]