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The map label for this gene is recO

Identifier: 119716162

GI number: 119716162

Start: 2059958

End: 2060692

Strand: Direct

Name: recO

Synonym: Noca_1930

Alternate gene names: 119716162

Gene position: 2059958-2060692 (Clockwise)

Preceding gene: 119716161

Following gene: 119716163

Centisome position: 41.32

GC content: 72.79

Gene sequence:

>735_bases
GTGCTGTACCGCGACGAGGCGATCGTGCTCCGCACCCACAAGCTGGGTGAGGCTGACCGGATCGTCACCCTCCTCACCCG
GCAGCGGGGCCGGGTCCGGGCGGTCGCCAAGGGGGTGCGCCGCACCACGTCGCGATTCGGGTCGAGGCTCGAGCCGTTCA
CCCACGTCGACCTGCAGCTGGCCGAGGGCCGCAACCTGGACACGATCACCCAGGCGGAGACGCTGACCCCGTTCTCCAAG
GGCCTGGGCCTCGACTACGACCGCTACACCGCCGGCACGGTGATGCTCGAGACCGCCGATCGTCTGGTGGCCGAGGAGCG
GGAGCCGTCGGTTCAGCAGTTCCTGCTCCTGGTCGGCGGCCTGCGGGCGATGGTCGCGGGGGAGCATGCACCCGGCCAGG
TGCTCGACTCCTACCTGCTGCGCTCGCTCGCGGTCGCCGGCTACGCCCCGTCCTTCGAGCACTGCGCGCGCTGCGGCACG
CTGTCCGCCGAGGGCGCCCACCGCTGGTTCAACCCGTCGATGGGCGGGATGCTCTGCTCGACCTGCCGGGTCCCGGGGTC
CGCGTCGCCGGCCCCGGAGACGGTCGCGCTCCTCGGCGCCCTCCTCGCGGGCGACTGGGCGGTGGTCGACCCCGCTGCGG
CCCGGAACCTCAAGGAGGCCAGCACCCTGGTCGCCGCCTACCTCGCCTGGCACCTCGAGCGAGGCCTGAAGTCGATGGCG
TACGTCGAGCGCTGA

Upstream 100 bases:

>100_bases
ACCGGGCCGCGATCGGCCTGGCCACCGGGTGCTGGAAGACGCCGCGCCGCCACCGCCGCTCCGGCGCCTGAAACGCGCAC
GCACCCGGCACAATGGAGGG

Downstream 100 bases:

>100_bases
TCCAGCGCCGCACCGAGTGCTCGCACCGGCCCGAACCCGGCGCCGGGCCCGGGCTCAGGTTCTGGGAGCACCCGCCGATC
CTTCCCTGGACGAAGGACGG

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MLYRDEAIVLRTHKLGEADRIVTLLTRQRGRVRAVAKGVRRTTSRFGSRLEPFTHVDLQLAEGRNLDTITQAETLTPFSK
GLGLDYDRYTAGTVMLETADRLVAEEREPSVQQFLLLVGGLRAMVAGEHAPGQVLDSYLLRSLAVAGYAPSFEHCARCGT
LSAEGAHRWFNPSMGGMLCSTCRVPGSASPAPETVALLGALLAGDWAVVDPAAARNLKEASTLVAAYLAWHLERGLKSMA
YVER

Sequences:

>Translated_244_residues
MLYRDEAIVLRTHKLGEADRIVTLLTRQRGRVRAVAKGVRRTTSRFGSRLEPFTHVDLQLAEGRNLDTITQAETLTPFSK
GLGLDYDRYTAGTVMLETADRLVAEEREPSVQQFLLLVGGLRAMVAGEHAPGQVLDSYLLRSLAVAGYAPSFEHCARCGT
LSAEGAHRWFNPSMGGMLCSTCRVPGSASPAPETVALLGALLAGDWAVVDPAAARNLKEASTLVAAYLAWHLERGLKSMA
YVER
>Mature_244_residues
MLYRDEAIVLRTHKLGEADRIVTLLTRQRGRVRAVAKGVRRTTSRFGSRLEPFTHVDLQLAEGRNLDTITQAETLTPFSK
GLGLDYDRYTAGTVMLETADRLVAEEREPSVQQFLLLVGGLRAMVAGEHAPGQVLDSYLLRSLAVAGYAPSFEHCARCGT
LSAEGAHRWFNPSMGGMLCSTCRVPGSASPAPETVALLGALLAGDWAVVDPAAARNLKEASTLVAAYLAWHLERGLKSMA
YVER

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_NOCSJ (A1SI05)

Other databases:

- EMBL:   CP000509
- RefSeq:   YP_923127.1
- ProteinModelPortal:   A1SI05
- SMR:   A1SI05
- STRING:   A1SI05
- GeneID:   4596377
- GenomeReviews:   CP000509_GR
- KEGG:   nca:Noca_1930
- eggNOG:   COG1381
- HOGENOM:   HBG634481
- OMA:   WHLERGL
- BioCyc:   NSP35761:NOCA_1930-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 26525; Mature: 26525

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYRDEAIVLRTHKLGEADRIVTLLTRQRGRVRAVAKGVRRTTSRFGSRLEPFTHVDLQL
CCCCCCEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
AEGRNLDTITQAETLTPFSKGLGLDYDRYTAGTVMLETADRLVAEEREPSVQQFLLLVGG
CCCCCCCHHHHHHHCCHHHHCCCCCCCHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
LRAMVAGEHAPGQVLDSYLLRSLAVAGYAPSFEHCARCGTLSAEGAHRWFNPSMGGMLCS
HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
TCRVPGSASPAPETVALLGALLAGDWAVVDPAAARNLKEASTLVAAYLAWHLERGLKSMA
HHCCCCCCCCCHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YVER
HHCC
>Mature Secondary Structure
MLYRDEAIVLRTHKLGEADRIVTLLTRQRGRVRAVAKGVRRTTSRFGSRLEPFTHVDLQL
CCCCCCEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
AEGRNLDTITQAETLTPFSKGLGLDYDRYTAGTVMLETADRLVAEEREPSVQQFLLLVGG
CCCCCCCHHHHHHHCCHHHHCCCCCCCHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
LRAMVAGEHAPGQVLDSYLLRSLAVAGYAPSFEHCARCGTLSAEGAHRWFNPSMGGMLCS
HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
TCRVPGSASPAPETVALLGALLAGDWAVVDPAAARNLKEASTLVAAYLAWHLERGLKSMA
HHCCCCCCCCCHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YVER
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA