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The map label for this gene is fecI [C]

Identifier: 119716140

GI number: 119716140

Start: 2037361

End: 2037861

Strand: Reverse

Name: fecI [C]

Synonym: Noca_1908

Alternate gene names: 119716140

Gene position: 2037861-2037361 (Counterclockwise)

Preceding gene: 119716143

Following gene: 119716139

Centisome position: 40.87

GC content: 74.65

Gene sequence:

>501_bases
ATGGATCGGCCCGTCTGGACCGCGGACGAGGCGCTCGAGCAGCTCTACGCGGCGCACTGGCGTCAGCTGGTGCGGCTCTC
CGTGCTGCTGGTGCGCGACCAGGGCCTCGCGGAGGAGATCGTGCAGGACGCCTTCGTCGCCGTCCACGGCCGCTGGTCGC
GACTGCGCGACCCCGAGAACGCGCTCGCCTACCTGCGCCAGGCGGTCGTCAACCGGTCGCGGTCCGCCCTGCGGCACCGC
GCGGTCGTCAACCGGCACGCCGCCTCGGTGCGCGCGACCGACACCCCGGACCCCACCCCGGACACCGACCGGCGCGAGGC
GGTGCTCGAGGCTCTGCGCGCCCTGCCCGTCCGGCAGCGCGAGGTGCTCGCGCTGCGCTACTACCTCGACCTGTCCGAGG
CGGAGATCGCCGACACCCTCGGCATCAGCCGGGGCGCGGTGAAGAGCCACGCCTCACGTGGTGCCGCCGCGCTGCGCGCC
CTGCTCGAGGAGGACCTGTGA

Upstream 100 bases:

>100_bases
CGCGACGATCTTGCAGAACAGGCAGTCCTCCACGAATCCTCCTCGGGGCGAGGGTAAACCGAATGCTGGCCCCGAGCGTG
CCACTAGCGTGAGTGCGGTG

Downstream 100 bases:

>100_bases
ACACGCCCCTGCCCGACCTGCCCGACCTGGTCCGGCTGCTGCACGACGCCGTCGACGACATCGAGCCCGTCGACCGGATC
GACGCGATCCGGGCGCGGAC

Product: sigma-70, region 4 type 2

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase ECF-Subfamily Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor; Sigma-; LuxR Family Transcriptional Regulator; ECF Subfamily RNA Polymerase Sigma-; Transcriptional Regulator LuxR Family; Sigma Factor; RNA Polymerase

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MDRPVWTADEALEQLYAAHWRQLVRLSVLLVRDQGLAEEIVQDAFVAVHGRWSRLRDPENALAYLRQAVVNRSRSALRHR
AVVNRHAASVRATDTPDPTPDTDRREAVLEALRALPVRQREVLALRYYLDLSEAEIADTLGISRGAVKSHASRGAAALRA
LLEEDL

Sequences:

>Translated_166_residues
MDRPVWTADEALEQLYAAHWRQLVRLSVLLVRDQGLAEEIVQDAFVAVHGRWSRLRDPENALAYLRQAVVNRSRSALRHR
AVVNRHAASVRATDTPDPTPDTDRREAVLEALRALPVRQREVLALRYYLDLSEAEIADTLGISRGAVKSHASRGAAALRA
LLEEDL
>Mature_166_residues
MDRPVWTADEALEQLYAAHWRQLVRLSVLLVRDQGLAEEIVQDAFVAVHGRWSRLRDPENALAYLRQAVVNRSRSALRHR
AVVNRHAASVRATDTPDPTPDTDRREAVLEALRALPVRQREVLALRYYLDLSEAEIADTLGISRGAVKSHASRGAAALRA
LLEEDL

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18661; Mature: 18661

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRPVWTADEALEQLYAAHWRQLVRLSVLLVRDQGLAEEIVQDAFVAVHGRWSRLRDPEN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHCCCHHH
ALAYLRQAVVNRSRSALRHRAVVNRHAASVRATDTPDPTPDTDRREAVLEALRALPVRQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHH
EVLALRYYLDLSEAEIADTLGISRGAVKSHASRGAAALRALLEEDL
HHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDRPVWTADEALEQLYAAHWRQLVRLSVLLVRDQGLAEEIVQDAFVAVHGRWSRLRDPEN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHCCCHHH
ALAYLRQAVVNRSRSALRHRAVVNRHAASVRATDTPDPTPDTDRREAVLEALRALPVRQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHH
EVLALRYYLDLSEAEIADTLGISRGAVKSHASRGAAALRALLEEDL
HHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA