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The map label for this gene is rsmE [H]

Identifier: 119716137

GI number: 119716137

Start: 2034702

End: 2035442

Strand: Direct

Name: rsmE [H]

Synonym: Noca_1905

Alternate gene names: 119716137

Gene position: 2034702-2035442 (Clockwise)

Preceding gene: 119716136

Following gene: 119716141

Centisome position: 40.81

GC content: 76.38

Gene sequence:

>741_bases
ATGTCGCTCCCGGTCCACGCGGTCCCGAGCCTCGAGGGCGTGCGCGCCGGCTCGGAGGTCACGGTCGAGGGCGACGAGGC
CCACCACGCGGTCGCCGTCCGCCGCCTGCGCGTGGGGGAGCAGGTGGTGCTCACCGACGGCGCCGGTACGTCGGTGGTCG
GGGCGGTCTCGGCCACCGGCAAGCGGGTGTTCACGGTCGCCGTCGAGTCGGTCCGGGTCGAGCCCGAGCCGGAGCCCGCG
GTCGTCGTCGTGCAGGCGCTCCCGAAGGGTGAGCGCGGCGAGCTCGCGGTCGAGGTGCTGACCGAGATCGGCGTGTCCGA
GATCGTGCCCTGGGAGGCGGCACGCAGCGTCACGGTCTGGAAAGGCGAGCGGGCGACAAAGTCCCTGGCCCGGTGGCGCG
CCACCGCCCGGGAGGCCGCCAAGCAGTCGCGGCGCATGCGGTTCCCCTCGGTCGCCCCGCTCGCGTCGACCGGGGACGTG
GTCGAGCTGCTCGGTGCCGCGGACCTGGCCGTGGTGCTCCACGAGGACGCGACCGGGCCGGTCGCCGGTCTCGACGTACC
CGCTGCCGGGCGCATCGTGGTCGTCGTCGGGCCCGAGGGCGGCCTGACCGAGGACGAGGTCGCCATCTTCGTCGGCGCGG
GCGCGGTGTGCGTCCGGCTGGGCGCCGAGGTGCTGCGGACCTCGACCGCCGGCGTCGCCGCCGTGGCGGCGCTGCTCTCC
CGCACGCCGCGCTGGCGCTGA

Upstream 100 bases:

>100_bases
CGATCCGCGGCGAGGAGGCGCCGACCGGCCAGGTGCGCCCCGGCGCCAAGTCGGTGTTCGGCCGGCTCCGCGACGCGTTC
AACGCGCACTGAGCACCGCC

Downstream 100 bases:

>100_bases
GCCGGCAAGCTGCCGATGAAACTCGGCGGCAGCCCGGCCACCTGCGCGGGCCCGAGCCCGCGGCGGACTCACTGCACGGT
GATGGTCTTGGTGTCCTCGG

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MSLPVHAVPSLEGVRAGSEVTVEGDEAHHAVAVRRLRVGEQVVLTDGAGTSVVGAVSATGKRVFTVAVESVRVEPEPEPA
VVVVQALPKGERGELAVEVLTEIGVSEIVPWEAARSVTVWKGERATKSLARWRATAREAAKQSRRMRFPSVAPLASTGDV
VELLGAADLAVVLHEDATGPVAGLDVPAAGRIVVVVGPEGGLTEDEVAIFVGAGAVCVRLGAEVLRTSTAGVAAVAALLS
RTPRWR

Sequences:

>Translated_246_residues
MSLPVHAVPSLEGVRAGSEVTVEGDEAHHAVAVRRLRVGEQVVLTDGAGTSVVGAVSATGKRVFTVAVESVRVEPEPEPA
VVVVQALPKGERGELAVEVLTEIGVSEIVPWEAARSVTVWKGERATKSLARWRATAREAAKQSRRMRFPSVAPLASTGDV
VELLGAADLAVVLHEDATGPVAGLDVPAAGRIVVVVGPEGGLTEDEVAIFVGAGAVCVRLGAEVLRTSTAGVAAVAALLS
RTPRWR
>Mature_245_residues
SLPVHAVPSLEGVRAGSEVTVEGDEAHHAVAVRRLRVGEQVVLTDGAGTSVVGAVSATGKRVFTVAVESVRVEPEPEPAV
VVVQALPKGERGELAVEVLTEIGVSEIVPWEAARSVTVWKGERATKSLARWRATAREAAKQSRRMRFPSVAPLASTGDVV
ELLGAADLAVVLHEDATGPVAGLDVPAAGRIVVVVGPEGGLTEDEVAIFVGAGAVCVRLGAEVLRTSTAGVAAVAALLSR
TPRWR

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

Organism=Escherichia coli, GI87082186, Length=233, Percent_Identity=28.755364806867, Blast_Score=94, Evalue=9e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015947
- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 25430; Mature: 25299

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPVHAVPSLEGVRAGSEVTVEGDEAHHAVAVRRLRVGEQVVLTDGAGTSVVGAVSATG
CCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEECCCC
KRVFTVAVESVRVEPEPEPAVVVVQALPKGERGELAVEVLTEIGVSEIVPWEAARSVTVW
CEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCHHHCCCCHHHCEEEEE
KGERATKSLARWRATAREAAKQSRRMRFPSVAPLASTGDVVELLGAADLAVVLHEDATGP
ECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCC
VAGLDVPAAGRIVVVVGPEGGLTEDEVAIFVGAGAVCVRLGAEVLRTSTAGVAAVAALLS
CCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHH
RTPRWR
CCCCCC
>Mature Secondary Structure 
SLPVHAVPSLEGVRAGSEVTVEGDEAHHAVAVRRLRVGEQVVLTDGAGTSVVGAVSATG
CCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEECCCC
KRVFTVAVESVRVEPEPEPAVVVVQALPKGERGELAVEVLTEIGVSEIVPWEAARSVTVW
CEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCHHHCCCCHHHCEEEEE
KGERATKSLARWRATAREAAKQSRRMRFPSVAPLASTGDVVELLGAADLAVVLHEDATGP
ECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCC
VAGLDVPAAGRIVVVVGPEGGLTEDEVAIFVGAGAVCVRLGAEVLRTSTAGVAAVAALLS
CCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHH
RTPRWR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]