| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is yceI [C]
Identifier: 119716101
GI number: 119716101
Start: 1993589
End: 1994158
Strand: Reverse
Name: yceI [C]
Synonym: Noca_1869
Alternate gene names: 119716101
Gene position: 1994158-1993589 (Counterclockwise)
Preceding gene: 119716104
Following gene: 119716100
Centisome position: 40.0
GC content: 68.6
Gene sequence:
>570_bases ATGACCACCGCCCCCGTCACCCCCGCCACCGTCTCCGACCTGACCGGCACCTGGACCCTCGACGCCTCGCACACCCGGGT CGGCTTCGTCGCCCGGCACGCGATGGTCACCAAGGTCCGCGGCGCGTTCAACGAGTTCGAGGGCACCGCCATCGTCGACG GCAGCAACCTCGGCGCCTCGAAGGTCACCGTCACCATCCAGGCCGCCAGCATCGACACCCGCAACGAGCAGCGCGACGGC CACCTGCGCAGCAACGACTTCCTCGCGATGGACGAGTACCCGACCATCACCTTCGTCTCCACCGACGTCCGCAGCACCGG CGCGACCTCCTTCGACCTGGTCGGCGACCTGACGATCAAGGGCGTCACGCAGTCGGTGACGATCCCGTTCCAGTTCGAGG GCGCGGCCACCGACCCCTTCGGCAACCTGCGCGCCGGCTTCGAGGGCTCGGTCACGATCAACCGCAAGGACTACGGGATC ACCTGGAACGCCGCGCTCGAGACCGGCGGCGTCCTCGTGGGCGAGAAGATCGTCCTCGAGTTCGAGGTCTCCGCGATCAA GAGCGCCTGA
Upstream 100 bases:
>100_bases AGAGCGTACCCGGGAATAGTTGACACGTCACCTAGGTTGATGGCAGAGTAGTTGATACATCAACCACTAGCCACCATCAG CACACCACTAGGAGCCTCGC
Downstream 100 bases:
>100_bases CCGAGGCACGAACCACCGAGAAGGGGGGTCGGTCGGCGTAGCCGACCGACCCCCCTTCTCCGTTTCCCTGACGACCCCAG GAGGCCGGACGCCCGATGGC
Product: YceI family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 189; Mature: 188
Protein sequence:
>189_residues MTTAPVTPATVSDLTGTWTLDASHTRVGFVARHAMVTKVRGAFNEFEGTAIVDGSNLGASKVTVTIQAASIDTRNEQRDG HLRSNDFLAMDEYPTITFVSTDVRSTGATSFDLVGDLTIKGVTQSVTIPFQFEGAATDPFGNLRAGFEGSVTINRKDYGI TWNAALETGGVLVGEKIVLEFEVSAIKSA
Sequences:
>Translated_189_residues MTTAPVTPATVSDLTGTWTLDASHTRVGFVARHAMVTKVRGAFNEFEGTAIVDGSNLGASKVTVTIQAASIDTRNEQRDG HLRSNDFLAMDEYPTITFVSTDVRSTGATSFDLVGDLTIKGVTQSVTIPFQFEGAATDPFGNLRAGFEGSVTINRKDYGI TWNAALETGGVLVGEKIVLEFEVSAIKSA >Mature_188_residues TTAPVTPATVSDLTGTWTLDASHTRVGFVARHAMVTKVRGAFNEFEGTAIVDGSNLGASKVTVTIQAASIDTRNEQRDGH LRSNDFLAMDEYPTITFVSTDVRSTGATSFDLVGDLTIKGVTQSVTIPFQFEGAATDPFGNLRAGFEGSVTINRKDYGIT WNAALETGGVLVGEKIVLEFEVSAIKSA
Specific function: Unknown
COG id: COG2353
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0312 family [H]
Homologues:
Organism=Escherichia coli, GI1787295, Length=140, Percent_Identity=42.8571428571429, Blast_Score=112, Evalue=2e-26,
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007372 [H]
Pfam domain/function: PF04264 YceI [H]
EC number: NA
Molecular weight: Translated: 20082; Mature: 19950
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTAPVTPATVSDLTGTWTLDASHTRVGFVARHAMVTKVRGAFNEFEGTAIVDGSNLGAS CCCCCCCCCCHHCCCEEEEECCCCCEEHHHHHHHHHHHHHHCHHHCCCEEEEECCCCCCC KVTVTIQAASIDTRNEQRDGHLRSNDFLAMDEYPTITFVSTDVRSTGATSFDLVGDLTIK EEEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCEEEEEEEEEEE GVTQSVTIPFQFEGAATDPFGNLRAGFEGSVTINRKDYGITWNAALETGGVLVGEKIVLE CCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEECCEEEEE FEVSAIKSA EEEEEECCC >Mature Secondary Structure TTAPVTPATVSDLTGTWTLDASHTRVGFVARHAMVTKVRGAFNEFEGTAIVDGSNLGAS CCCCCCCCCHHCCCEEEEECCCCCEEHHHHHHHHHHHHHHCHHHCCCEEEEECCCCCCC KVTVTIQAASIDTRNEQRDGHLRSNDFLAMDEYPTITFVSTDVRSTGATSFDLVGDLTIK EEEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCEEEEEEEEEEE GVTQSVTIPFQFEGAATDPFGNLRAGFEGSVTINRKDYGITWNAALETGGVLVGEKIVLE CCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEECCEEEEE FEVSAIKSA EEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA