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The map label for this gene is ybfF [C]

Identifier: 119716024

GI number: 119716024

Start: 1902522

End: 1903328

Strand: Direct

Name: ybfF [C]

Synonym: Noca_1790

Alternate gene names: 119716024

Gene position: 1902522-1903328 (Clockwise)

Preceding gene: 119716023

Following gene: 119716026

Centisome position: 38.16

GC content: 72.99

Gene sequence:

>807_bases
GTGGTGCTGAACGAGTCCGGCCCCCACCAGGGGCTGCACGTCACGAGCCTGGGGGAGCGCGGTCCGCTGGTCGCCTTCTG
CCACGGGCTGTTCGGGCAGGGCAAGAACTGGACGACGGTCGCGAAGGCTGTCGCGGAGGACCATCGGGTGCTGCTGGTCG
ACATGCCGCACCACGGCCGCTCGGAGTGGGTCGACCACTTCGACTACGTCGACGTCGCCGACCGGGTCGCCGGCCTGTTC
GAGGCGGAGGACCCGGTGGCGCTGGTCGGCCACTCGATGGGCGGGAAGGCCGCGATGGTGCTCGCGCTGCGCCACCCCGA
GCTGGTCGAGCGGCTGTGCGTGGTGGACGTGTCGCCGGTCGACTACGAGGAGCGGGGCGAGTTCGCCGGCTACATCGACG
CGATGCTCGCGCTCGACCTGGCCACGCTCGAGCACCGGCGCGACGCCGACGCGGCGCTGGCCGACGCGGTGCCGAGCCCG
ACCGTGCGCAGCTTCCTCCTGCAGAACCTGCACCACCACGCGGGGCGGTGGACCTGGCGGCCCAACCTGGCCGTCCTCGG
TCGCGACCTGGAGGCTCTCGGCGGCTGGCCCGAGGACGCGCTCGCCGGACGGCCGCCGTACCAGCGCCCGACGCTGTGGA
TCGCCGGGCAGCGCTCCGGCTACGTCCGCGACGAGTACGCCGCGGCCATGGACCGGTGGTTCCCCCTCAACCGCCGGGTC
GTGGTCAAGAACGCCGGCCACTGGGTGCACTCCGAGCAGCCGGAGGTCTTCATCGAGGTGCTGCGCCGCTTCCTCGCCCA
GGCCTGA

Upstream 100 bases:

>100_bases
AGTACCGGCGCGCCAACTTCCGGTGGACCTGTGCCCACGTCGGCGATCGGCTGGCGGTCGTCCTCCGCGACCGTGACCTG
ACCCCGACGGGAGTGCACGA

Downstream 100 bases:

>100_bases
CCCCGTCGAGTCGGGACTTCCGTCGGTTCATGCGTCAGAACCGACCGTCAGAACTCCCGACTCGACCGGCGGGCGCGGTA
GGCGGCCACGGCGTTGCGGT

Product: alpha/beta hydrolase fold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MVLNESGPHQGLHVTSLGERGPLVAFCHGLFGQGKNWTTVAKAVAEDHRVLLVDMPHHGRSEWVDHFDYVDVADRVAGLF
EAEDPVALVGHSMGGKAAMVLALRHPELVERLCVVDVSPVDYEERGEFAGYIDAMLALDLATLEHRRDADAALADAVPSP
TVRSFLLQNLHHHAGRWTWRPNLAVLGRDLEALGGWPEDALAGRPPYQRPTLWIAGQRSGYVRDEYAAAMDRWFPLNRRV
VVKNAGHWVHSEQPEVFIEVLRRFLAQA

Sequences:

>Translated_268_residues
MVLNESGPHQGLHVTSLGERGPLVAFCHGLFGQGKNWTTVAKAVAEDHRVLLVDMPHHGRSEWVDHFDYVDVADRVAGLF
EAEDPVALVGHSMGGKAAMVLALRHPELVERLCVVDVSPVDYEERGEFAGYIDAMLALDLATLEHRRDADAALADAVPSP
TVRSFLLQNLHHHAGRWTWRPNLAVLGRDLEALGGWPEDALAGRPPYQRPTLWIAGQRSGYVRDEYAAAMDRWFPLNRRV
VVKNAGHWVHSEQPEVFIEVLRRFLAQA
>Mature_268_residues
MVLNESGPHQGLHVTSLGERGPLVAFCHGLFGQGKNWTTVAKAVAEDHRVLLVDMPHHGRSEWVDHFDYVDVADRVAGLF
EAEDPVALVGHSMGGKAAMVLALRHPELVERLCVVDVSPVDYEERGEFAGYIDAMLALDLATLEHRRDADAALADAVPSP
TVRSFLLQNLHHHAGRWTWRPNLAVLGRDLEALGGWPEDALAGRPPYQRPTLWIAGQRSGYVRDEYAAAMDRWFPLNRRV
VVKNAGHWVHSEQPEVFIEVLRRFLAQA

Specific function: Unknown

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dmpD/todF/xylF esterase family [H]

Homologues:

Organism=Homo sapiens, GI23200012, Length=252, Percent_Identity=38.4920634920635, Blast_Score=159, Evalue=2e-39,
Organism=Homo sapiens, GI23200008, Length=252, Percent_Identity=38.4920634920635, Blast_Score=159, Evalue=2e-39,
Organism=Homo sapiens, GI223941839, Length=248, Percent_Identity=30.6451612903226, Blast_Score=100, Evalue=1e-21,
Organism=Escherichia coli, GI1786902, Length=246, Percent_Identity=32.1138211382114, Blast_Score=120, Evalue=9e-29,
Organism=Caenorhabditis elegans, GI17508535, Length=265, Percent_Identity=32.8301886792453, Blast_Score=130, Evalue=5e-31,
Organism=Caenorhabditis elegans, GI17507063, Length=269, Percent_Identity=27.1375464684015, Blast_Score=90, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6321468, Length=261, Percent_Identity=29.8850574712644, Blast_Score=99, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24640348, Length=261, Percent_Identity=33.7164750957854, Blast_Score=130, Evalue=8e-31,
Organism=Drosophila melanogaster, GI24646055, Length=259, Percent_Identity=29.7297297297297, Blast_Score=96, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR012908 [H]

Pfam domain/function: PF00561 Abhydrolase_1; PF07819 PGAP1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 29875; Mature: 29875

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: PS00120 LIPASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLNESGPHQGLHVTSLGERGPLVAFCHGLFGQGKNWTTVAKAVAEDHRVLLVDMPHHGR
CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCH
SEWVDHFDYVDVADRVAGLFEAEDPVALVGHSMGGKAAMVLALRHPELVERLCVVDVSPV
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEECCHHHHHHHHHCCCCCC
DYEERGEFAGYIDAMLALDLATLEHRRDADAALADAVPSPTVRSFLLQNLHHHAGRWTWR
CHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEC
PNLAVLGRDLEALGGWPEDALAGRPPYQRPTLWIAGQRSGYVRDEYAAAMDRWFPLNRRV
CCHHEECCCHHHHCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEE
VVKNAGHWVHSEQPEVFIEVLRRFLAQA
EEECCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVLNESGPHQGLHVTSLGERGPLVAFCHGLFGQGKNWTTVAKAVAEDHRVLLVDMPHHGR
CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCH
SEWVDHFDYVDVADRVAGLFEAEDPVALVGHSMGGKAAMVLALRHPELVERLCVVDVSPV
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEECCHHHHHHHHHCCCCCC
DYEERGEFAGYIDAMLALDLATLEHRRDADAALADAVPSPTVRSFLLQNLHHHAGRWTWR
CHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEC
PNLAVLGRDLEALGGWPEDALAGRPPYQRPTLWIAGQRSGYVRDEYAAAMDRWFPLNRRV
CCHHEECCCHHHHCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEE
VVKNAGHWVHSEQPEVFIEVLRRFLAQA
EEECCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]