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The map label for this gene is atpD

Identifier: 119715998

GI number: 119715998

Start: 1872393

End: 1873847

Strand: Direct

Name: atpD

Synonym: Noca_1763

Alternate gene names: 119715998

Gene position: 1872393-1873847 (Clockwise)

Preceding gene: 119715997

Following gene: 119715999

Centisome position: 37.55

GC content: 66.8

Gene sequence:

>1455_bases
ATGACTGCAACGATCGAAGAGACCCAGGAGACCGGCTCCGCTGGCGTCGGTCGGATCGCCCGGGTGATCGGCCCGGTCGT
CGACGTCGAGTTCCCGGTGGACTCGATGCCGGAGATCTACAACAAGCTCGAGTGCGAGCTCACGCTCGAAGGCGAGGCCA
AGATCCTCTCGCTCGAGGTCGCCCAGCACATCGGTGACGGCATGGTCCGCGCGATCTCGCTGCAGCCGACCGACGGCCTG
GTCCGCGGGGCGCAGGTGACGGACACGGGCGGCCCGATCACGGTGCCCGTCGGCGACGCGACCCTCGGCAAGGTGTTCAA
CACCCTCGGCGAGGTGCTCAACCTCGAGGAGGGCGAGACCTTCGAGGTCAAGGAGCGCTGGGGCATCCACCGCAAGGCGC
CCGCGTTCGACCAGCTGGAGTCGAAGACCCAGATGTTCGAGACCGGCATCAAGGTCATCGACCTGCTCACGCCGTACGTG
CAGGGCGGCAAGATCGGCCTGTTCGGCGGTGCCGGCGTCGGCAAGACCGTGCTGATCCAGGAGATGATCGCCCGCGTCGC
CAAGGACCACGGTGGCGTGTCGGTGTTCGCCGGCGTCGGCGAGCGCACCCGTGAGGGCAACGACCTGATCGTCGAGATGG
AGGAGGCCGGCGTCATCGGCCAGACCGCCCTCGTGTTCGGTCAGATGGACGAGCCGCCGGGCACCCGTCTGCGGGTCGCG
CTGTCCGCGCTGACGATGGCGGAGTACTTCCGCGACGTGCAGGGCCAGGACGTGCTGCTGTTCATCGACAACATCTTCCG
GTTCACCCAGGCGGGTTCGGAGGTGTCGACCCTGCTGGGCCGGATGCCCTCCGCGGTGGGCTACCAGCCGAACCTCGCCG
ACGAGATGGGCACGCTCCAGGAGCGGATCACCTCGACGCGTGGTCACTCGATCACCTCGATGCAGGCGATCTACGTGCCG
GCCGACGACTACACCGACCCGGCACCGGCGACGACGTTCGCCCACCTGGACGCGACGACCGAGCTCTCCCGTGAGATCGC
CTCGCTCGGCATCTACCCGGCCGTGGACCCGCTGACCTCGACCTCGCGGATCCTCGACCCGCAGTACATCGGGCAGGCGC
ACTACGACTGCGCGATCCGGATCAAGCAGATCCTGCAGCGCAACAAGGAGCTCCAGGACATCATCGCGATCCTGGGTGTG
GACGAGCTCTCCGAAGAGGACAAGATCATCGTGTCCCGGGCTCGCCGGATCCAGCGGTTCCTGTCCCAGAACACCTACGT
CGCCAAGCAGTTCACCGGCATCGAGGGCTCGACCGTTCCCGTGTCGGAGACGATCGAGGGGTTCAACAAGATCGCCGACG
GCGAGTACGACCACGTGGCCGAGCAGGCCTTCTTCATGTGCGGCGGTCTGGACGACGTCGAGCAGAAGTGGGCCGAGATC
CAGAAGAGCCTCTGA

Upstream 100 bases:

>100_bases
GCCAACCAGGCCCGACAGGCCGGCATTACCCAGGAAATCAGCGAGATCGTCGGTGGCGTCAACGCGCTCGCCGACGCACA
AGCCGGGAGTGAGTGAAGAC

Downstream 100 bases:

>100_bases
CATGGCCGAGTCCGGGGAGCACCTGCACGTCGAGCTCGTCGCCGCCGACCGGACCGTCTGGTCCGGAGAGGCGGAGATGG
TGATCGCGCGGACCACCGAG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta

Number of amino acids: Translated: 484; Mature: 483

Protein sequence:

>484_residues
MTATIEETQETGSAGVGRIARVIGPVVDVEFPVDSMPEIYNKLECELTLEGEAKILSLEVAQHIGDGMVRAISLQPTDGL
VRGAQVTDTGGPITVPVGDATLGKVFNTLGEVLNLEEGETFEVKERWGIHRKAPAFDQLESKTQMFETGIKVIDLLTPYV
QGGKIGLFGGAGVGKTVLIQEMIARVAKDHGGVSVFAGVGERTREGNDLIVEMEEAGVIGQTALVFGQMDEPPGTRLRVA
LSALTMAEYFRDVQGQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLADEMGTLQERITSTRGHSITSMQAIYVP
ADDYTDPAPATTFAHLDATTELSREIASLGIYPAVDPLTSTSRILDPQYIGQAHYDCAIRIKQILQRNKELQDIIAILGV
DELSEEDKIIVSRARRIQRFLSQNTYVAKQFTGIEGSTVPVSETIEGFNKIADGEYDHVAEQAFFMCGGLDDVEQKWAEI
QKSL

Sequences:

>Translated_484_residues
MTATIEETQETGSAGVGRIARVIGPVVDVEFPVDSMPEIYNKLECELTLEGEAKILSLEVAQHIGDGMVRAISLQPTDGL
VRGAQVTDTGGPITVPVGDATLGKVFNTLGEVLNLEEGETFEVKERWGIHRKAPAFDQLESKTQMFETGIKVIDLLTPYV
QGGKIGLFGGAGVGKTVLIQEMIARVAKDHGGVSVFAGVGERTREGNDLIVEMEEAGVIGQTALVFGQMDEPPGTRLRVA
LSALTMAEYFRDVQGQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLADEMGTLQERITSTRGHSITSMQAIYVP
ADDYTDPAPATTFAHLDATTELSREIASLGIYPAVDPLTSTSRILDPQYIGQAHYDCAIRIKQILQRNKELQDIIAILGV
DELSEEDKIIVSRARRIQRFLSQNTYVAKQFTGIEGSTVPVSETIEGFNKIADGEYDHVAEQAFFMCGGLDDVEQKWAEI
QKSL
>Mature_483_residues
TATIEETQETGSAGVGRIARVIGPVVDVEFPVDSMPEIYNKLECELTLEGEAKILSLEVAQHIGDGMVRAISLQPTDGLV
RGAQVTDTGGPITVPVGDATLGKVFNTLGEVLNLEEGETFEVKERWGIHRKAPAFDQLESKTQMFETGIKVIDLLTPYVQ
GGKIGLFGGAGVGKTVLIQEMIARVAKDHGGVSVFAGVGERTREGNDLIVEMEEAGVIGQTALVFGQMDEPPGTRLRVAL
SALTMAEYFRDVQGQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLADEMGTLQERITSTRGHSITSMQAIYVPA
DDYTDPAPATTFAHLDATTELSREIASLGIYPAVDPLTSTSRILDPQYIGQAHYDCAIRIKQILQRNKELQDIIAILGVD
ELSEEDKIIVSRARRIQRFLSQNTYVAKQFTGIEGSTVPVSETIEGFNKIADGEYDHVAEQAFFMCGGLDDVEQKWAEIQ
KSL

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=469, Percent_Identity=63.3262260127932, Blast_Score=575, Evalue=1e-164,
Organism=Homo sapiens, GI19913424, Length=348, Percent_Identity=29.5977011494253, Blast_Score=129, Evalue=6e-30,
Organism=Homo sapiens, GI19913426, Length=361, Percent_Identity=24.3767313019391, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI19913428, Length=358, Percent_Identity=24.8603351955307, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI50345984, Length=380, Percent_Identity=25.2631578947368, Blast_Score=84, Evalue=4e-16,
Organism=Homo sapiens, GI4757810, Length=380, Percent_Identity=25.2631578947368, Blast_Score=84, Evalue=4e-16,
Organism=Escherichia coli, GI1790170, Length=464, Percent_Identity=61.4224137931034, Blast_Score=575, Evalue=1e-165,
Organism=Escherichia coli, GI1788251, Length=308, Percent_Identity=33.1168831168831, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1790172, Length=314, Percent_Identity=26.7515923566879, Blast_Score=98, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI25144756, Length=480, Percent_Identity=62.0833333333333, Blast_Score=571, Evalue=1e-163,
Organism=Caenorhabditis elegans, GI17565854, Length=379, Percent_Identity=28.7598944591029, Blast_Score=129, Evalue=4e-30,
Organism=Caenorhabditis elegans, GI17510931, Length=360, Percent_Identity=24.1666666666667, Blast_Score=100, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17570191, Length=359, Percent_Identity=23.6768802228412, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI71988080, Length=363, Percent_Identity=25.6198347107438, Blast_Score=82, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI71988063, Length=363, Percent_Identity=25.6198347107438, Blast_Score=82, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI71988074, Length=404, Percent_Identity=24.2574257425743, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322581, Length=462, Percent_Identity=61.6883116883117, Blast_Score=565, Evalue=1e-162,
Organism=Saccharomyces cerevisiae, GI6319603, Length=431, Percent_Identity=25.2900232018561, Blast_Score=97, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6320016, Length=257, Percent_Identity=26.4591439688716, Blast_Score=88, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6319370, Length=381, Percent_Identity=25.4593175853018, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24638766, Length=472, Percent_Identity=62.2881355932203, Blast_Score=569, Evalue=1e-162,
Organism=Drosophila melanogaster, GI28574560, Length=476, Percent_Identity=58.8235294117647, Blast_Score=536, Evalue=1e-153,
Organism=Drosophila melanogaster, GI20129479, Length=322, Percent_Identity=29.8136645962733, Blast_Score=132, Evalue=5e-31,
Organism=Drosophila melanogaster, GI24583992, Length=322, Percent_Identity=28.8819875776398, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24583988, Length=322, Percent_Identity=28.8819875776398, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24583986, Length=322, Percent_Identity=28.8819875776398, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24583984, Length=322, Percent_Identity=28.8819875776398, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI281361666, Length=362, Percent_Identity=24.3093922651934, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24646341, Length=362, Percent_Identity=24.3093922651934, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI17136796, Length=362, Percent_Identity=24.3093922651934, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24658560, Length=378, Percent_Identity=25.6613756613757, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24638768, Length=95, Percent_Identity=49.4736842105263, Blast_Score=88, Evalue=2e-17,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB_NOCSJ (A1SHJ1)

Other databases:

- EMBL:   CP000509
- RefSeq:   YP_922963.1
- ProteinModelPortal:   A1SHJ1
- SMR:   A1SHJ1
- STRING:   A1SHJ1
- GeneID:   4597945
- GenomeReviews:   CP000509_GR
- KEGG:   nca:Noca_1763
- eggNOG:   COG0055
- HOGENOM:   HBG565875
- OMA:   IGQEHYD
- ProtClustDB:   PRK09280
- BioCyc:   NSP35761:NOCA_1763-MONOMER
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 52631; Mature: 52500

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATIEETQETGSAGVGRIARVIGPVVDVEFPVDSMPEIYNKLECELTLEGEAKILSLEV
CCCCCHHHHHCCCCHHHHHHHHHHHHHEECCCCCCHHHHHCCEEEEEEECCCCEEEHHHH
AQHIGDGMVRAISLQPTDGLVRGAQVTDTGGPITVPVGDATLGKVFNTLGEVLNLEEGET
HHHCCCCCEEEEEECCCCCHHCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCE
FEVKERWGIHRKAPAFDQLESKTQMFETGIKVIDLLTPYVQGGKIGLFGGAGVGKTVLIQ
EEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
EMIARVAKDHGGVSVFAGVGERTREGNDLIVEMEEAGVIGQTALVFGQMDEPPGTRLRVA
HHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCHHHEEECCCCCCCCHHHHH
LSALTMAEYFRDVQGQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLADEMGTLQ
HHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCHHHHHHHHCCCHHCCCCCCCHHHHHHHH
ERITSTRGHSITSMQAIYVPADDYTDPAPATTFAHLDATTELSREIASLGIYPAVDPLTS
HHHHHCCCCCEEEEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCC
TSRILDPQYIGQAHYDCAIRIKQILQRNKELQDIIAILGVDELSEEDKIIVSRARRIQRF
HHHHCCHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHH
LSQNTYVAKQFTGIEGSTVPVSETIEGFNKIADGEYDHVAEQAFFMCGGLDDVEQKWAEI
HHCCCEEEHEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
QKSL
HHCC
>Mature Secondary Structure 
TATIEETQETGSAGVGRIARVIGPVVDVEFPVDSMPEIYNKLECELTLEGEAKILSLEV
CCCCHHHHHCCCCHHHHHHHHHHHHHEECCCCCCHHHHHCCEEEEEEECCCCEEEHHHH
AQHIGDGMVRAISLQPTDGLVRGAQVTDTGGPITVPVGDATLGKVFNTLGEVLNLEEGET
HHHCCCCCEEEEEECCCCCHHCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCE
FEVKERWGIHRKAPAFDQLESKTQMFETGIKVIDLLTPYVQGGKIGLFGGAGVGKTVLIQ
EEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
EMIARVAKDHGGVSVFAGVGERTREGNDLIVEMEEAGVIGQTALVFGQMDEPPGTRLRVA
HHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCHHHEEECCCCCCCCHHHHH
LSALTMAEYFRDVQGQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLADEMGTLQ
HHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCHHHHHHHHCCCHHCCCCCCCHHHHHHHH
ERITSTRGHSITSMQAIYVPADDYTDPAPATTFAHLDATTELSREIASLGIYPAVDPLTS
HHHHHCCCCCEEEEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCC
TSRILDPQYIGQAHYDCAIRIKQILQRNKELQDIIAILGVDELSEEDKIIVSRARRIQRF
HHHHCCHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHH
LSQNTYVAKQFTGIEGSTVPVSETIEGFNKIADGEYDHVAEQAFFMCGGLDDVEQKWAEI
HHCCCEEEHEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
QKSL
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA