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The map label for this gene is lytR [H]

Identifier: 119715974

GI number: 119715974

Start: 1846322

End: 1847230

Strand: Direct

Name: lytR [H]

Synonym: Noca_1739

Alternate gene names: 119715974

Gene position: 1846322-1847230 (Clockwise)

Preceding gene: 119715973

Following gene: 119715977

Centisome position: 37.03

GC content: 69.42

Gene sequence:

>909_bases
ATGTCAGCACGCTTCCACAAGCTCGTTCGGCTCGGGACCATCGGGCTGGTCCTGGCGATCGCGGCGCTCGTCGTGCCGGA
CTCGGCGGTGAAGAGCACCGAGGTCGCGCTGGTGAAGGTGAACCGGGCCGACGGCGTCGACCTGACCCCGGACGTGGTCT
GGATCCTCGCGGTCGGCTCGGATGCCCGGCCGGGTCACGACATGACCCGGACCCGCGGTGACGCCCTCCAGCTGATCGGG
ATGAACACCCGCACCGGTGCTGCCTCGGCGATCGGCGTGCCCCGCGACTCGTGGGTCTCGATCCCCGGCCACGGCTTCGA
GAAGATCAACGCCGCCCTCTACTTCGGCGGCCCCCAGCTGCTCGGGCAGACCGTCGGCAACCTGGTCGGCGTCCAGCCCG
ACTACGTGTTCGTGAGCCGGTTCAAGTTCTTCCAGGCGATGGTCAAGGACATCGGCGGCATCACCGTCGACAACCCCGTC
GCCTTCGACGACACCTACCTCAAGCCGAAGGGCTTCCGGAAGGGCAGGATCCACCTGGGCGGGTACGACGCGATGGCGTT
CTCGCGGATCCGGCACAACCTGATCCGCGGCGACTTCGACCGGTCGGCCAACCAGCAGCGGGTGCTGCGGGGGATCCAGG
CCAGGGTGCGGGCGCGTGCCCACGTCCCCGGCTTCATCGAGCGAGGCGTGCTGTCGGTGATGCAGCACCTCTACACCGAC
CTCTCACCGGTCGAGCTGTTCCGGCTGGCCCAGGTGGTCGCGCACGTCGACCCGCACAAGATCACCACCTGCGTCGTGCA
GGGCGGGATCGGCAGCATCGGCGGCGCGAGCGTGGTGCTGCCGAACGTCGGCATGGCCCGCCGGCTCGGCAACGCGGCCC
GGAACGACGCGACGATCGGGCACTGCTGA

Upstream 100 bases:

>100_bases
GGCTCGAGCGCGACGTCCGGGTGCAGGGGCGGCTCTACCTGACCCGCACCGACCGCGCCTGGCGGATCTTCGGCTACGAC
ATGACGAAGGGGACCCGGTG

Downstream 100 bases:

>100_bases
CCCGGAGGACAGCAGTGCCCGAGCGTCGGAGGTGGAGCGTTCGACCCGAGGGAACGGTGGATCAGTTCGGGATGATGTGA
CCGCCGGCCCAGCCCAGCTC

Product: cell envelope-related transcriptional attenuator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MSARFHKLVRLGTIGLVLAIAALVVPDSAVKSTEVALVKVNRADGVDLTPDVVWILAVGSDARPGHDMTRTRGDALQLIG
MNTRTGAASAIGVPRDSWVSIPGHGFEKINAALYFGGPQLLGQTVGNLVGVQPDYVFVSRFKFFQAMVKDIGGITVDNPV
AFDDTYLKPKGFRKGRIHLGGYDAMAFSRIRHNLIRGDFDRSANQQRVLRGIQARVRARAHVPGFIERGVLSVMQHLYTD
LSPVELFRLAQVVAHVDPHKITTCVVQGGIGSIGGASVVLPNVGMARRLGNAARNDATIGHC

Sequences:

>Translated_302_residues
MSARFHKLVRLGTIGLVLAIAALVVPDSAVKSTEVALVKVNRADGVDLTPDVVWILAVGSDARPGHDMTRTRGDALQLIG
MNTRTGAASAIGVPRDSWVSIPGHGFEKINAALYFGGPQLLGQTVGNLVGVQPDYVFVSRFKFFQAMVKDIGGITVDNPV
AFDDTYLKPKGFRKGRIHLGGYDAMAFSRIRHNLIRGDFDRSANQQRVLRGIQARVRARAHVPGFIERGVLSVMQHLYTD
LSPVELFRLAQVVAHVDPHKITTCVVQGGIGSIGGASVVLPNVGMARRLGNAARNDATIGHC
>Mature_301_residues
SARFHKLVRLGTIGLVLAIAALVVPDSAVKSTEVALVKVNRADGVDLTPDVVWILAVGSDARPGHDMTRTRGDALQLIGM
NTRTGAASAIGVPRDSWVSIPGHGFEKINAALYFGGPQLLGQTVGNLVGVQPDYVFVSRFKFFQAMVKDIGGITVDNPVA
FDDTYLKPKGFRKGRIHLGGYDAMAFSRIRHNLIRGDFDRSANQQRVLRGIQARVRARAHVPGFIERGVLSVMQHLYTDL
SPVELFRLAQVVAHVDPHKITTCVVQGGIGSIGGASVVLPNVGMARRLGNAARNDATIGHC

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 32460; Mature: 32329

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSARFHKLVRLGTIGLVLAIAALVVPDSAVKSTEVALVKVNRADGVDLTPDVVWILAVGS
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCEEEEEEEECCCCCCCCCCEEEEEEECC
DARPGHDMTRTRGDALQLIGMNTRTGAASAIGVPRDSWVSIPGHGFEKINAALYFGGPQL
CCCCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEECCCCCHHHHCEEEEECCHHH
LGQTVGNLVGVQPDYVFVSRFKFFQAMVKDIGGITVDNPVAFDDTYLKPKGFRKGRIHLG
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCEEEEC
GYDAMAFSRIRHNLIRGDFDRSANQQRVLRGIQARVRARAHVPGFIERGVLSVMQHLYTD
CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
LSPVELFRLAQVVAHVDPHKITTCVVQGGIGSIGGASVVLPNVGMARRLGNAARNDATIG
CCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEECCCHHHHHHCCHHCCCCCCC
HC
CC
>Mature Secondary Structure 
SARFHKLVRLGTIGLVLAIAALVVPDSAVKSTEVALVKVNRADGVDLTPDVVWILAVGS
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCEEEEEEEECCCCCCCCCCEEEEEEECC
DARPGHDMTRTRGDALQLIGMNTRTGAASAIGVPRDSWVSIPGHGFEKINAALYFGGPQL
CCCCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEECCCCCHHHHCEEEEECCHHH
LGQTVGNLVGVQPDYVFVSRFKFFQAMVKDIGGITVDNPVAFDDTYLKPKGFRKGRIHLG
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCEEEEC
GYDAMAFSRIRHNLIRGDFDRSANQQRVLRGIQARVRARAHVPGFIERGVLSVMQHLYTD
CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
LSPVELFRLAQVVAHVDPHKITTCVVQGGIGSIGGASVVLPNVGMARRLGNAARNDATIG
CCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEECCCHHHHHHCCHHCCCCCCC
HC
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA