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The map label for this gene is xerC [H]

Identifier: 119715959

GI number: 119715959

Start: 1833425

End: 1834561

Strand: Direct

Name: xerC [H]

Synonym: Noca_1724

Alternate gene names: 119715959

Gene position: 1833425-1834561 (Clockwise)

Preceding gene: 119715958

Following gene: 119715961

Centisome position: 36.77

GC content: 68.6

Gene sequence:

>1137_bases
ATGGCAGCAAACATCGCGAAGCGGCCGAACGGCCGATGGCGGGCCCGATACCGCGACGACACTGGGCGAGAGCATGCCCG
ACATTTCGTGCGCAAGGTTGACGCCCAGGCGTGGCTCGACGAGCAGACCGCCAGGATGGTGCGGGGGGAGTGGGCCGACC
CGAGGGCTGGACGGGAGTTGCTCAGCGCGTATGCAACCCGTTGGCAGTCGGTCCAGGTCTCATCTCCGGGAACGGCGCGG
ATCGTCGACAACGCGCTGCGACTCCACATCCTGCCGCGGCTCGGAAGCGAGCGCGTCGCCAACATCCGCCGGAGCGACGT
ACAGGCCTTCGTGAAGTGGCTCGAGAGCCGCGAGCTTCGGCCGGCCACCGAGAGCCAGCCGGCACGCACCCTGTCAGCTG
GAAGCGTCCGGAACATCTATGAGGTGCTCGCGCGTGTCATGGACGCCGCAGTGGAGGATCGGGTCATCGCGGTCAGTCCT
TGTCGCCGAATCGCCCTGCCGAAGGGCCACGACGACGAGGTCGAGGTCCCGACACTCGACGAGATCGATCGCGTCCGTGA
TGCGCTGGCCGAGCGATGGCAGGTGCTCCCCGTCGTGCTCGCCGGCTCCGGACTGCGCGTCGGCGAGCTGCTCGGGCTCA
GGCTGTCCGATGTCGACTTCCTGCGCCGGTCGATCCGTGTCGAGCGACAGCGCCTGCAAACGAATCAGATCGCTCCGTTG
AAGTCGAAGGCCTCGCGGCGGAGGGTCCCCGTCGGCCAGGTGGTGATCGACGCACTCGCGGCTCACCTCGCTTCGTATCC
ACCGACCGAGGAGGCCTTGTTCACCGACGAGTTCGGCAAGCCCCTGACCTACCGGCGCTGGAAGAGGCTCGTCAGCGACG
CAGCCAAGGTCGCCGGCGCCGAGATCACGTCGCACTCCTTCCGGCACTTCGCCGCCTCCGCGCTGATCTCCGGGGGCGCG
TCGGTGAAGCAGGTGCAGGCTTTCCTCGGGCATGCGTCGGCGGTCGTGACACTGCGGACGTACGCCCACCTATGGCCAGG
CGACGAGGACCGGACCCGGAAGGTGCTCGACGCCGCTCTCGGACCGCTCGGAGCCCGTGCGGACTCCGTGCGGACCGAGG
TGGCGCCGGAGGGGTAA

Upstream 100 bases:

>100_bases
TGGCTCACCGAACAGACCAACCGCGCACAGGGCCGCCGCTGACAGTCCCAGACGTCCGATCCCGGAGAGACGATGGAGCA
AGCACGAGAGGACCACCAAC

Downstream 100 bases:

>100_bases
ACGCGCAGGTCAGTCGCCTGCGCGCGAAATCAGGCCTTCTTGGTCTCCCAGAAGATCTCGGCGATCTGGTCGATCTTCGC
GAGCAGCTCGTCGGCCTTGC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MAANIAKRPNGRWRARYRDDTGREHARHFVRKVDAQAWLDEQTARMVRGEWADPRAGRELLSAYATRWQSVQVSSPGTAR
IVDNALRLHILPRLGSERVANIRRSDVQAFVKWLESRELRPATESQPARTLSAGSVRNIYEVLARVMDAAVEDRVIAVSP
CRRIALPKGHDDEVEVPTLDEIDRVRDALAERWQVLPVVLAGSGLRVGELLGLRLSDVDFLRRSIRVERQRLQTNQIAPL
KSKASRRRVPVGQVVIDALAAHLASYPPTEEALFTDEFGKPLTYRRWKRLVSDAAKVAGAEITSHSFRHFAASALISGGA
SVKQVQAFLGHASAVVTLRTYAHLWPGDEDRTRKVLDAALGPLGARADSVRTEVAPEG

Sequences:

>Translated_378_residues
MAANIAKRPNGRWRARYRDDTGREHARHFVRKVDAQAWLDEQTARMVRGEWADPRAGRELLSAYATRWQSVQVSSPGTAR
IVDNALRLHILPRLGSERVANIRRSDVQAFVKWLESRELRPATESQPARTLSAGSVRNIYEVLARVMDAAVEDRVIAVSP
CRRIALPKGHDDEVEVPTLDEIDRVRDALAERWQVLPVVLAGSGLRVGELLGLRLSDVDFLRRSIRVERQRLQTNQIAPL
KSKASRRRVPVGQVVIDALAAHLASYPPTEEALFTDEFGKPLTYRRWKRLVSDAAKVAGAEITSHSFRHFAASALISGGA
SVKQVQAFLGHASAVVTLRTYAHLWPGDEDRTRKVLDAALGPLGARADSVRTEVAPEG
>Mature_377_residues
AANIAKRPNGRWRARYRDDTGREHARHFVRKVDAQAWLDEQTARMVRGEWADPRAGRELLSAYATRWQSVQVSSPGTARI
VDNALRLHILPRLGSERVANIRRSDVQAFVKWLESRELRPATESQPARTLSAGSVRNIYEVLARVMDAAVEDRVIAVSPC
RRIALPKGHDDEVEVPTLDEIDRVRDALAERWQVLPVVLAGSGLRVGELLGLRLSDVDFLRRSIRVERQRLQTNQIAPLK
SKASRRRVPVGQVVIDALAAHLASYPPTEEALFTDEFGKPLTYRRWKRLVSDAAKVAGAEITSHSFRHFAASALISGGAS
VKQVQAFLGHASAVVTLRTYAHLWPGDEDRTRKVLDAALGPLGARADSVRTEVAPEG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=277, Percent_Identity=26.3537906137184, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1790244, Length=242, Percent_Identity=23.9669421487603, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 42061; Mature: 41930

Theoretical pI: Translated: 10.85; Mature: 10.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAANIAKRPNGRWRARYRDDTGREHARHFVRKVDAQAWLDEQTARMVRGEWADPRAGREL
CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LSAYATRWQSVQVSSPGTARIVDNALRLHILPRLGSERVANIRRSDVQAFVKWLESRELR
HHHHHHHHCEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PATESQPARTLSAGSVRNIYEVLARVMDAAVEDRVIAVSPCRRIALPKGHDDEVEVPTLD
CCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCCCCCCCCCCCHH
EIDRVRDALAERWQVLPVVLAGSGLRVGELLGLRLSDVDFLRRSIRVERQRLQTNQIAPL
HHHHHHHHHHHHHHHHHHEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
KSKASRRRVPVGQVVIDALAAHLASYPPTEEALFTDEFGKPLTYRRWKRLVSDAAKVAGA
HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
EITSHSFRHFAASALISGGASVKQVQAFLGHASAVVTLRTYAHLWPGDEDRTRKVLDAAL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
GPLGARADSVRTEVAPEG
CCCCCCHHHHHCCCCCCC
>Mature Secondary Structure 
AANIAKRPNGRWRARYRDDTGREHARHFVRKVDAQAWLDEQTARMVRGEWADPRAGREL
CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LSAYATRWQSVQVSSPGTARIVDNALRLHILPRLGSERVANIRRSDVQAFVKWLESRELR
HHHHHHHHCEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PATESQPARTLSAGSVRNIYEVLARVMDAAVEDRVIAVSPCRRIALPKGHDDEVEVPTLD
CCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCCCCCCCCCCCHH
EIDRVRDALAERWQVLPVVLAGSGLRVGELLGLRLSDVDFLRRSIRVERQRLQTNQIAPL
HHHHHHHHHHHHHHHHHHEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
KSKASRRRVPVGQVVIDALAAHLASYPPTEEALFTDEFGKPLTYRRWKRLVSDAAKVAGA
HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
EITSHSFRHFAASALISGGASVKQVQAFLGHASAVVTLRTYAHLWPGDEDRTRKVLDAAL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
GPLGARADSVRTEVAPEG
CCCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12840036 [H]