Click here to switch to the map view.

The map label for this gene is traA [H]

Identifier: 119715956

GI number: 119715956

Start: 1829796

End: 1832396

Strand: Direct

Name: traA [H]

Synonym: Noca_1721

Alternate gene names: 119715956

Gene position: 1829796-1832396 (Clockwise)

Preceding gene: 119715955

Following gene: 119715958

Centisome position: 36.7

GC content: 71.36

Gene sequence:

>2601_bases
GTGAAGTTCTACCGCGGCGCGGCGAAGGCGGCGCGCGCCTACGTCGAGCGTGATCGCTCGTGGGCCGATGACTACTACCT
CGCCGAGGGCACCGGCGTCGCCGAGCGACTCACTGCGACCTCGGATGGTGTCGCAAGTGCGGGCCTGATGGACGGCGACA
CCTATGAGCAGTGGGTCGCCGGGATCGACATCGATACCGGGCGGAAGAAGGGCCGGGTCCGGGAGGACGCGAACGCGCTG
CGTTTCGTCGAGGTCACCGTCAACGGTCCGAAAACCTGGTCGCTGGCCGCCGCGCTGCACCCAGAACTCTCGATCGCGCT
GGACGGAGCCCAGGAGAAGGCCGCCGCCGAGATCATCAGCTGGGTCGCCCAGCGTGCGACCACCCGGGTCGGTCCGCGTG
GACGACAGGTGCAGGTGCCGGTGGAGCGGATCGAGGCGGCGGTGATCCGGCACTACACGTCGCGGGCCGGCGACCCGCAC
CGTCATCTGCACCTTCAGGTCAACGCCCGCGTCTTCGCCGCCGGGGCGTGGCGGGGTCTGCACTCGGTGGGTGTGCGCGA
CATGATCGAGGCGATCAACGGGATCGGGCATGCAGCGGTCGCCACGAACCCGGCGTTTCGAGCGGTGCTGGCCGCACATG
GCTTCACTTTGGACGCCGAGACAGGGGAGATCGAGCAGCTCGCGTCCTACGTCGGGGCGTTCAGCGCTCGGACCAGTCAG
ATCCACCGCAACATCGACCGGTACGAAGCCGAGTGGCGGCGAGAGCATCCTGGTGAGGGGCCGGGGCCGCGGCTGCGTGA
GATGTGGGATCGGCGGGCGTGGGCCGATGCGCGGCCGGACAAGGTCGTCCCCACGGATGGCGCTGACCTGGTTGCCAGGT
GGAACGACGAGCTACGCGCCCTGGGCTACCGCGACCCAGCTGCCCCAGCCGCACTCGAGGCAACCCAGATCGCCTGGATC
GACCGGGACGGGGCGGCAGACTGGGTGATCTCGCAGCTCGGATCGAAGCGCTCAGCATGGAACATCGCGGACGTTCGCGG
CAAGGTCGAGGTCCTGCTGGCACAGACCAATCTGGTCGCGGAGTCCGCGGCACGCATCGAGCTTGCCGAGGACGTCACGG
CTCGGGCCGCCGCTCGCTGTACGCCGCTGCTCACACGGTCGAACGTGCCCCAGCACGTCCGGGCCCTGACCTCCCAGCAG
GTCCTCGCGGTCGAGGGCGACATCGTGCGTCGCCTCGCCTGCCGCGCCGAGACTCCCGCAAGGCGGGTCCGCCTTCAGGG
GCGTGGGCTGACGCGGGTCGACCCCACCCAGGCGGCCGTCGTGGGCACGCTGGCCGGCGATGGCCCGCTGGTCGTCGTGG
AGGGCGCGGCCGGCGCCGGCAAGACCACCGCGCTGAGGTCGGCGCAGGCCACGCTGGCTCGGCAGGGGCATCGGCTGCTG
GTGGTGACGCCGACGTTGAAGGCGGCCGAGGTCGCCGCCGCGGAGACCGACGCCGACGGGCACTCGGCCGCCTGGCTGAT
CCACCAGCACGGCTGGCGCTGGGACGACGACGGGCACTGGGCACGCCGACCCAACACCACACCCGACCCGGCCGCCCGGC
TGAGACCCGGTGATCTGCTGCTCATCGACGAGGCGGGCATGCTGGACCAGGACACCGCCCGCGCGCTCTTGACGATCGCC
GACGAGGCCGGGGCGCGGGTCGCCCTGGTCGGCGACCGACACCAGCTACCCGCAGTCGGACGCGGCGGCGTACTCGACCA
CGCGATCGCGTGGGCCAACCCCACCGCCGTCGTGTCGTTGGAGAAGGTGCACCGGTTCACCGACCCCGACTACGCGGCAC
TCAGCCTGACGATGCGCAAGGGCGACAACCCGGAGGAGGTCTTCGACTCGCTCTACCGCCGCGGACAGGTCGTCATCCAT
CCCAGCGACATCGAACGCGACCTCGCGTTGAGCCAGGCCGGTGCCGCCGGTGACCTCGTCGTTGCCGACACTCGCGAGCA
GGTCGCCCGCCTGAACGCCGCAATCCGTGACCAGCGCCAAGTCACGGCCGAGTCCACCGTCTCGATGACCACGTCTCGCG
GTGAACGGATCGGGATTGGTGACCGCGTGGCCACCCGCCGCAACGACCACGACCTCGGGGTCGCGAACCGGCAGACCTGG
ACCGTCACCGGCCTCGGCGAGGACGGCAGCCTCACCGTCCGCGGACGAGGACGTGACCGGCTGCTCCCCGCGGAGTACGC
GAACAGGTTCGTCGAGCTGGCCTACGCCACCACCGTCCACGGGGCACAGGGAGAGACCGTCGATGCCGCGCACGTCGCCA
TCGGGGACACCACCGGGGCTGCCGCGGCGTACGTCGCAATGACCCGCGGCCGGGAGCGCAACACCGCGCACCTGGTGGCC
GAGTCCGTCGAGGATGCCCGCAGGCAGTGGGTCGAGGTCTTCGCCCGCGACCGTGCCGACCTCGGCCCGGCCCACGCGAA
GCGGCAGGCGATCGAGGCCATCGACCGGTACGGCAGCCAGCAGCGCCGGAGGCCGGCGCAAGGGCCCGTCGAGGAACCGC
CACGACCCGTCCCGTCCTCCGGCAGCGGGATCGGCCTGTGA

Upstream 100 bases:

>100_bases
AGATGGGTCGCCCGTGATCGGGCGGCCCACGCGGCATTCCTAGGGGTCCGTTGGTTGTCGACGGACCTCGTTGAGGGCGG
TGGTCCGGGTGCATGGCGGG

Downstream 100 bases:

>100_bases
GACCCGCCAGTGACTCACTGACGCGGCTTGCGCCGGCGGACCGGTCGCCACTCGACGCCGATCTCGCCTGCGAGCCACGC
GCTGAATCCGGCAGGGTCGC

Product: exonuclease V subunit alpha

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 866; Mature: 866

Protein sequence:

>866_residues
MKFYRGAAKAARAYVERDRSWADDYYLAEGTGVAERLTATSDGVASAGLMDGDTYEQWVAGIDIDTGRKKGRVREDANAL
RFVEVTVNGPKTWSLAAALHPELSIALDGAQEKAAAEIISWVAQRATTRVGPRGRQVQVPVERIEAAVIRHYTSRAGDPH
RHLHLQVNARVFAAGAWRGLHSVGVRDMIEAINGIGHAAVATNPAFRAVLAAHGFTLDAETGEIEQLASYVGAFSARTSQ
IHRNIDRYEAEWRREHPGEGPGPRLREMWDRRAWADARPDKVVPTDGADLVARWNDELRALGYRDPAAPAALEATQIAWI
DRDGAADWVISQLGSKRSAWNIADVRGKVEVLLAQTNLVAESAARIELAEDVTARAAARCTPLLTRSNVPQHVRALTSQQ
VLAVEGDIVRRLACRAETPARRVRLQGRGLTRVDPTQAAVVGTLAGDGPLVVVEGAAGAGKTTALRSAQATLARQGHRLL
VVTPTLKAAEVAAAETDADGHSAAWLIHQHGWRWDDDGHWARRPNTTPDPAARLRPGDLLLIDEAGMLDQDTARALLTIA
DEAGARVALVGDRHQLPAVGRGGVLDHAIAWANPTAVVSLEKVHRFTDPDYAALSLTMRKGDNPEEVFDSLYRRGQVVIH
PSDIERDLALSQAGAAGDLVVADTREQVARLNAAIRDQRQVTAESTVSMTTSRGERIGIGDRVATRRNDHDLGVANRQTW
TVTGLGEDGSLTVRGRGRDRLLPAEYANRFVELAYATTVHGAQGETVDAAHVAIGDTTGAAAAYVAMTRGRERNTAHLVA
ESVEDARRQWVEVFARDRADLGPAHAKRQAIEAIDRYGSQQRRRPAQGPVEEPPRPVPSSGSGIGL

Sequences:

>Translated_866_residues
MKFYRGAAKAARAYVERDRSWADDYYLAEGTGVAERLTATSDGVASAGLMDGDTYEQWVAGIDIDTGRKKGRVREDANAL
RFVEVTVNGPKTWSLAAALHPELSIALDGAQEKAAAEIISWVAQRATTRVGPRGRQVQVPVERIEAAVIRHYTSRAGDPH
RHLHLQVNARVFAAGAWRGLHSVGVRDMIEAINGIGHAAVATNPAFRAVLAAHGFTLDAETGEIEQLASYVGAFSARTSQ
IHRNIDRYEAEWRREHPGEGPGPRLREMWDRRAWADARPDKVVPTDGADLVARWNDELRALGYRDPAAPAALEATQIAWI
DRDGAADWVISQLGSKRSAWNIADVRGKVEVLLAQTNLVAESAARIELAEDVTARAAARCTPLLTRSNVPQHVRALTSQQ
VLAVEGDIVRRLACRAETPARRVRLQGRGLTRVDPTQAAVVGTLAGDGPLVVVEGAAGAGKTTALRSAQATLARQGHRLL
VVTPTLKAAEVAAAETDADGHSAAWLIHQHGWRWDDDGHWARRPNTTPDPAARLRPGDLLLIDEAGMLDQDTARALLTIA
DEAGARVALVGDRHQLPAVGRGGVLDHAIAWANPTAVVSLEKVHRFTDPDYAALSLTMRKGDNPEEVFDSLYRRGQVVIH
PSDIERDLALSQAGAAGDLVVADTREQVARLNAAIRDQRQVTAESTVSMTTSRGERIGIGDRVATRRNDHDLGVANRQTW
TVTGLGEDGSLTVRGRGRDRLLPAEYANRFVELAYATTVHGAQGETVDAAHVAIGDTTGAAAAYVAMTRGRERNTAHLVA
ESVEDARRQWVEVFARDRADLGPAHAKRQAIEAIDRYGSQQRRRPAQGPVEEPPRPVPSSGSGIGL
>Mature_866_residues
MKFYRGAAKAARAYVERDRSWADDYYLAEGTGVAERLTATSDGVASAGLMDGDTYEQWVAGIDIDTGRKKGRVREDANAL
RFVEVTVNGPKTWSLAAALHPELSIALDGAQEKAAAEIISWVAQRATTRVGPRGRQVQVPVERIEAAVIRHYTSRAGDPH
RHLHLQVNARVFAAGAWRGLHSVGVRDMIEAINGIGHAAVATNPAFRAVLAAHGFTLDAETGEIEQLASYVGAFSARTSQ
IHRNIDRYEAEWRREHPGEGPGPRLREMWDRRAWADARPDKVVPTDGADLVARWNDELRALGYRDPAAPAALEATQIAWI
DRDGAADWVISQLGSKRSAWNIADVRGKVEVLLAQTNLVAESAARIELAEDVTARAAARCTPLLTRSNVPQHVRALTSQQ
VLAVEGDIVRRLACRAETPARRVRLQGRGLTRVDPTQAAVVGTLAGDGPLVVVEGAAGAGKTTALRSAQATLARQGHRLL
VVTPTLKAAEVAAAETDADGHSAAWLIHQHGWRWDDDGHWARRPNTTPDPAARLRPGDLLLIDEAGMLDQDTARALLTIA
DEAGARVALVGDRHQLPAVGRGGVLDHAIAWANPTAVVSLEKVHRFTDPDYAALSLTMRKGDNPEEVFDSLYRRGQVVIH
PSDIERDLALSQAGAAGDLVVADTREQVARLNAAIRDQRQVTAESTVSMTTSRGERIGIGDRVATRRNDHDLGVANRQTW
TVTGLGEDGSLTVRGRGRDRLLPAEYANRFVELAYATTVHGAQGETVDAAHVAIGDTTGAAAAYVAMTRGRERNTAHLVA
ESVEDARRQWVEVFARDRADLGPAHAKRQAIEAIDRYGSQQRRRPAQGPVEEPPRPVPSSGSGIGL

Specific function: traI Has Been Identified As DNA Helicase I And It Also Has An Additional Activity Of Site-Specific Nicking At Orit. DNA Helicase I Is A Potent DNA-Dependent ATPase. [C]

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mobA/mobL family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000606
- InterPro:   IPR005053
- InterPro:   IPR014136 [H]

Pfam domain/function: PF03389 MobA_MobL; PF01443 Viral_helicase1 [H]

EC number: 3.6.1.- [C]

Molecular weight: Translated: 93637; Mature: 93637

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFYRGAAKAARAYVERDRSWADDYYLAEGTGVAERLTATSDGVASAGLMDGDTYEQWVA
CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHH
GIDIDTGRKKGRVREDANALRFVEVTVNGPKTWSLAAALHPELSIALDGAQEKAAAEIIS
CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCHHHHHHHHHH
WVAQRATTRVGPRGRQVQVPVERIEAAVIRHYTSRAGDPHRHLHLQVNARVFAAGAWRGL
HHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEHHHHHH
HSVGVRDMIEAINGIGHAAVATNPAFRAVLAAHGFTLDAETGEIEQLASYVGAFSARTSQ
HHCCHHHHHHHHHCCCCHHEECCHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHH
IHRNIDRYEAEWRREHPGEGPGPRLREMWDRRAWADARPDKVVPTDGADLVARWNDELRA
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCHHHH
LGYRDPAAPAALEATQIAWIDRDGAADWVISQLGSKRSAWNIADVRGKVEVLLAQTNLVA
CCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCHHHCCCEEEEEEEEHHHHH
ESAARIELAEDVTARAAARCTPLLTRSNVPQHVRALTSQQVLAVEGDIVRRLACRAETPA
HHHHHEEHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHCCCEEEECHHHHHHHHHCCCCCH
RRVRLQGRGLTRVDPTQAAVVGTLAGDGPLVVVEGAAGAGKTTALRSAQATLARQGHRLL
HHEEECCCCCCCCCCCHHEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEE
VVTPTLKAAEVAAAETDADGHSAAWLIHQHGWRWDDDGHWARRPNTTPDPAARLRPGDLL
EECCCCCHHHHHHCCCCCCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCHHHCCCCCEE
LIDEAGMLDQDTARALLTIADEAGARVALVGDRHQLPAVGRGGVLDHAIAWANPTAVVSL
EEECCCCCCCHHHHEEEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCCCEEEEH
EKVHRFTDPDYAALSLTMRKGDNPEEVFDSLYRRGQVVIHPSDIERDLALSQAGAAGDLV
HHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCHHHHHHCCCCCCCEE
VADTREQVARLNAAIRDQRQVTAESTVSMTTSRGERIGIGDRVATRRNDHDLGVANRQTW
EECCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCEE
TVTGLGEDGSLTVRGRGRDRLLPAEYANRFVELAYATTVHGAQGETVDAAHVAIGDTTGA
EEEEECCCCEEEEEECCCCCCCCHHHHHHHEEHHHHEEECCCCCCCCCEEEEEECCCCCH
AAAYVAMTRGRERNTAHLVAESVEDARRQWVEVFARDRADLGPAHAKRQAIEAIDRYGSQ
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCH
QRRRPAQGPVEEPPRPVPSSGSGIGL
HHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKFYRGAAKAARAYVERDRSWADDYYLAEGTGVAERLTATSDGVASAGLMDGDTYEQWVA
CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHH
GIDIDTGRKKGRVREDANALRFVEVTVNGPKTWSLAAALHPELSIALDGAQEKAAAEIIS
CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCHHHHHHHHHH
WVAQRATTRVGPRGRQVQVPVERIEAAVIRHYTSRAGDPHRHLHLQVNARVFAAGAWRGL
HHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEHHHHHH
HSVGVRDMIEAINGIGHAAVATNPAFRAVLAAHGFTLDAETGEIEQLASYVGAFSARTSQ
HHCCHHHHHHHHHCCCCHHEECCHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHH
IHRNIDRYEAEWRREHPGEGPGPRLREMWDRRAWADARPDKVVPTDGADLVARWNDELRA
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCHHHH
LGYRDPAAPAALEATQIAWIDRDGAADWVISQLGSKRSAWNIADVRGKVEVLLAQTNLVA
CCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCHHHCCCEEEEEEEEHHHHH
ESAARIELAEDVTARAAARCTPLLTRSNVPQHVRALTSQQVLAVEGDIVRRLACRAETPA
HHHHHEEHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHCCCEEEECHHHHHHHHHCCCCCH
RRVRLQGRGLTRVDPTQAAVVGTLAGDGPLVVVEGAAGAGKTTALRSAQATLARQGHRLL
HHEEECCCCCCCCCCCHHEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEE
VVTPTLKAAEVAAAETDADGHSAAWLIHQHGWRWDDDGHWARRPNTTPDPAARLRPGDLL
EECCCCCHHHHHHCCCCCCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCHHHCCCCCEE
LIDEAGMLDQDTARALLTIADEAGARVALVGDRHQLPAVGRGGVLDHAIAWANPTAVVSL
EEECCCCCCCHHHHEEEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCCCEEEEH
EKVHRFTDPDYAALSLTMRKGDNPEEVFDSLYRRGQVVIHPSDIERDLALSQAGAAGDLV
HHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCHHHHHHCCCCCCCEE
VADTREQVARLNAAIRDQRQVTAESTVSMTTSRGERIGIGDRVATRRNDHDLGVANRQTW
EECCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCEE
TVTGLGEDGSLTVRGRGRDRLLPAEYANRFVELAYATTVHGAQGETVDAAHVAIGDTTGA
EEEEECCCCEEEEEECCCCCCCCHHHHHHHEEHHHHEEECCCCCCCCCEEEEEECCCCCH
AAAYVAMTRGRERNTAHLVAESVEDARRQWVEVFARDRADLGPAHAKRQAIEAIDRYGSQ
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCH
QRRRPAQGPVEEPPRPVPSSGSGIGL
HHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on acid anhydrides; In phosphorus-containing anhydrides [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]