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The map label for this gene is sigW [H]

Identifier: 119715911

GI number: 119715911

Start: 1783525

End: 1784049

Strand: Direct

Name: sigW [H]

Synonym: Noca_1676

Alternate gene names: 119715911

Gene position: 1783525-1784049 (Clockwise)

Preceding gene: 119715910

Following gene: 119715912

Centisome position: 35.77

GC content: 73.33

Gene sequence:

>525_bases
ATGGCCGCCGAGAGCCAGGGAAGCCCCGAGGCGTTGATGCAGCAGCTGCACGACGAGCACGCCGCCGCGCTCTGGGGCTA
CTGCCTGCGCCTGACCGGGCAGGACCGGGCCCGCGCCGAGGACGTGGTGCAGGAGACGCTGCTGCGTGCCTGGCGGAACT
TCCCCGCCCTCGACGAGGCGCACGGCTCGGTGCGCGCCTGGCTGTTCCGGGTGGCGCGCAACATCGTCATCGACGAGTGG
CGCACCAAGCGGTGGCAGAGCGAGATCGCCGTGGCCGACGTCCCGGACGGGGCCGGCGAGTCGGACCGCACCGACCAGCT
CCTGTTGTCGTGGGTGGTCGGCGACGCACTCACCAGGCTCTCGGCCGAGCACCGGGCGGTGCTGCTCGAGTGCTACTACC
GCGGCCAGTCCGTCGCGGAGGCCTCGCGGCGGCTCGGCGTGCCGGAGGGCACCGTCAAGTCGCGCACGCACTACGCGCTC
CGGGCACTGCGCCTGGCCCTCGAGGAGAGCGGGGTGGTCGCATGA

Upstream 100 bases:

>100_bases
CAGGAGCGCGCGGCCGCCTCCTGATGTCGCCGCGCGGCACCACGGCTGGTCCAGACTGAACCGGACAGCCGGTTCCTGCG
TGTGACGGGTGGGAGGTGCG

Downstream 100 bases:

>100_bases
CCAGCGTCCCGCACCCGGCCGACGGCTGCGAGCTCGCCCACCTCGACGGCGCCTACGTGCTCGGCGCACTGGCGCCGGAG
GAGCGGCTGGAGTTCGAGCG

Product: sigma-70 region 2 domain-containing protein

Products: NA

Alternate protein names: Sigma-W factor [H]

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MAAESQGSPEALMQQLHDEHAAALWGYCLRLTGQDRARAEDVVQETLLRAWRNFPALDEAHGSVRAWLFRVARNIVIDEW
RTKRWQSEIAVADVPDGAGESDRTDQLLLSWVVGDALTRLSAEHRAVLLECYYRGQSVAEASRRLGVPEGTVKSRTHYAL
RALRLALEESGVVA

Sequences:

>Translated_174_residues
MAAESQGSPEALMQQLHDEHAAALWGYCLRLTGQDRARAEDVVQETLLRAWRNFPALDEAHGSVRAWLFRVARNIVIDEW
RTKRWQSEIAVADVPDGAGESDRTDQLLLSWVVGDALTRLSAEHRAVLLECYYRGQSVAEASRRLGVPEGTVKSRTHYAL
RALRLALEESGVVA
>Mature_173_residues
AAESQGSPEALMQQLHDEHAAALWGYCLRLTGQDRARAEDVVQETLLRAWRNFPALDEAHGSVRAWLFRVARNIVIDEWR
TKRWQSEIAVADVPDGAGESDRTDQLLLSWVVGDALTRLSAEHRAVLLECYYRGQSVAEASRRLGVPEGTVKSRTHYALR
ALRLALEESGVVA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-W controls genes involved in transport processes and detoxification [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014294
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19463; Mature: 19332

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAESQGSPEALMQQLHDEHAAALWGYCLRLTGQDRARAEDVVQETLLRAWRNFPALDEA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHH
HGSVRAWLFRVARNIVIDEWRTKRWQSEIAVADVPDGAGESDRTDQLLLSWVVGDALTRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
SAEHRAVLLECYYRGQSVAEASRRLGVPEGTVKSRTHYALRALRLALEESGVVA
HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AAESQGSPEALMQQLHDEHAAALWGYCLRLTGQDRARAEDVVQETLLRAWRNFPALDEA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHH
HGSVRAWLFRVARNIVIDEWRTKRWQSEIAVADVPDGAGESDRTDQLLLSWVVGDALTRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
SAEHRAVLLECYYRGQSVAEASRRLGVPEGTVKSRTHYALRALRLALEESGVVA
HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377; 12207695 [H]