| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715901
Identifier: 119715901
GI number: 119715901
Start: 1769814
End: 1771460
Strand: Direct
Name: 119715901
Synonym: Noca_1666
Alternate gene names: NA
Gene position: 1769814-1771460 (Clockwise)
Preceding gene: 119715900
Following gene: 119715902
Centisome position: 35.5
GC content: 74.92
Gene sequence:
>1647_bases GTGAGCACCGTGTCCGCCCCTGCGCCGGTCGACCTGGCCGGCACCCGGCGCCTGGTCCGCCTGGCCGTGCGTCGCGACCG GTACACGATCCCCGCCTGGTGGGCGGGGCTGGGCCTGTTCGTGGCGGCGACGACCGCGATGTTCACCGAGGATCTGGCCC GCCAGGAGGACCTGCTGACCGAGACCGAGCTGGTGGCGACCAACGCAGGCATGCGTCTGATCGGGCTCACCTCCGGACCG AGCGTCGGCGGTTACCTGCTGCACCGCGAGTTCGTGACGCTCGCCGTGCTCGCCGCGGTGATGAGCACCTTCGCCGTGAT CCGGCACACCCGCCAGAACGAGGAGCTGGGCCGGGCCGAGATGCTCGGCTCGACCGTCGTCGGACGGCAGGCTGGCCTGG CGGCCGGCGTCCTGGTCGCCCTGGCTGCCGACCTCGGCCTCGCGCTGGTGCTCGGCGCCGCCATCGCGGTCAACGGGCTG TCGGTCGAGGGGGCGTTCCTGGCCGGTGCCTCCGTCGCCGCGGTCGGCATCGTCTGGGTCGGCCTCGCCGCGGTGACCTG CCAGCTCTCCGCGACGACCCGCGGAGCCGCCGGGATCGCGATGGGCGCGCTCGGGGTCGCGTTCGTGCTCAGCGGCGTCG GCAACATGATCGGGACCGTCGACGAGGCCGGGCTCCGGGTGGCCAGCGCCTGGCCGGCGTGGCTCTCGCCCATCGGGTGG GGCCAGCAGACCCGGCCGTTCGCCGACGCCCTCTGGTGGCCGCTGCTGCTGGCCCTGGCGTTCGCCGGCCTGCTGCTCGT GGTCGCCGTCGCGCTCGGCTCGCGCCGCGACGTCGGGCGCGGCCTCTGGGCGCAGCGCAGGGGCCCCGGGCACGCCCGGC GGACCCTGCTGAGCCCCACCGGACTGGTCTGGCGGCTGCAGCGTGGGGTGTTCCTGGCATGGGGTGTGGCCCTCACCGTC TTCGGGCTGATCTTCGGGAGCCTCACCGAACAGATCCAGGGGCTGGAGGGGGACGCCAAGGAGTGGTGGACGGAGATGGG TGGCACCGCCGAGGTGGTCGCGGCCTACCAGGTGTCGATGATCCAGATGGCCGGCATGTTCGTGGCCATGTACGCGGTCC AGGCGCTGTTGCGGATGCGGGTCGACGAGCTCGGCGGCACGCTCGAGCCGCTGCTGGCCGCCGGCGTCACCCGGATCCGC TGGTGGTGGGCCCACCTCGTCACCGTGGTGGGCGGGTCGGCGGCGCTGATGGTGGGGTTCGCCGCCGGCATGGGGCTGGC GACCGGCCAGGTCGTCGGGGACACCGGCGTCCAGGTGCGCGACCTCCTGTGGGCCGGCCTGGTCCAGCTCCCGGGCGTGG TGGTCGTCGCCGCGGCGGTGGTCGCGATCGTCTGCCTGGTCCCGCGCTGGTCGGTCCCGGCCAGCTGGGCGCTGCTGCTC GCGGCCCTCGTGGCCGGGCCGATGTTCGGGCCGGGGCTGAAGCTGCCGACGTGGGTGCAGGACCTCTCGCCGTTCACCCA CAGCCCGCAGGCACCCGCCGTGCCGGTCGACGCCGTACCGCTGCTCGCTCTCGGCGGTGCCGCCGTCGCCCTCGCGGGCG CCGCCCTGCTCGTCCTGCGACGCCGCGACCTGGCCCTGCCGGCGTGA
Upstream 100 bases:
>100_bases ACGACGTCCGGTCGCTCACCAGCACCCCGCCCACGCTGGAGGAGCTGTTCCTCCGCCACTACGGCGACCGCCTCGATCGG CCGACCGCCGTCGGGAGCCG
Downstream 100 bases:
>100_bases CCCGAGGCGGCCAAAGGTCCCGAAGGTGCAGCCGTTCGCCTCGGGCGCCCGCCCACCGCTGAAGCTACCGTCCGGTACGT GACGGCTCTGCTGATGACCG
Product: putative ABC antibiotics transporter
Products: NA
Alternate protein names: Exporter Of Polyketide Antibiotics; ABC Transporter Membrane-Spanning Protein; Anibiotic ABC Transporter Efflux Pump; ABC Transporter Membrane Protein; ABC Transporter; ABC Transporter Permease Protein; Exporter Of Polyketide Antibiotics- Like Protein; ABC Antibiotics Transporter; Abc Transporter Integral Membrane Subunit; Tetronasin Resistance Transmembrane Protein; ABC Transporter Transmembrane Subunit; TnrB3 Protein; ABC Transporter Permease; ABC Transporter Polyketide Tetronasin Permease; Tetronasin-Transport Membrane Protein ABC Transporter; ABC-2 Type Transport System Permease Protein; Amino Acid Permease
Number of amino acids: Translated: 548; Mature: 547
Protein sequence:
>548_residues MSTVSAPAPVDLAGTRRLVRLAVRRDRYTIPAWWAGLGLFVAATTAMFTEDLARQEDLLTETELVATNAGMRLIGLTSGP SVGGYLLHREFVTLAVLAAVMSTFAVIRHTRQNEELGRAEMLGSTVVGRQAGLAAGVLVALAADLGLALVLGAAIAVNGL SVEGAFLAGASVAAVGIVWVGLAAVTCQLSATTRGAAGIAMGALGVAFVLSGVGNMIGTVDEAGLRVASAWPAWLSPIGW GQQTRPFADALWWPLLLALAFAGLLLVVAVALGSRRDVGRGLWAQRRGPGHARRTLLSPTGLVWRLQRGVFLAWGVALTV FGLIFGSLTEQIQGLEGDAKEWWTEMGGTAEVVAAYQVSMIQMAGMFVAMYAVQALLRMRVDELGGTLEPLLAAGVTRIR WWWAHLVTVVGGSAALMVGFAAGMGLATGQVVGDTGVQVRDLLWAGLVQLPGVVVVAAAVVAIVCLVPRWSVPASWALLL AALVAGPMFGPGLKLPTWVQDLSPFTHSPQAPAVPVDAVPLLALGGAAVALAGAALLVLRRRDLALPA
Sequences:
>Translated_548_residues MSTVSAPAPVDLAGTRRLVRLAVRRDRYTIPAWWAGLGLFVAATTAMFTEDLARQEDLLTETELVATNAGMRLIGLTSGP SVGGYLLHREFVTLAVLAAVMSTFAVIRHTRQNEELGRAEMLGSTVVGRQAGLAAGVLVALAADLGLALVLGAAIAVNGL SVEGAFLAGASVAAVGIVWVGLAAVTCQLSATTRGAAGIAMGALGVAFVLSGVGNMIGTVDEAGLRVASAWPAWLSPIGW GQQTRPFADALWWPLLLALAFAGLLLVVAVALGSRRDVGRGLWAQRRGPGHARRTLLSPTGLVWRLQRGVFLAWGVALTV FGLIFGSLTEQIQGLEGDAKEWWTEMGGTAEVVAAYQVSMIQMAGMFVAMYAVQALLRMRVDELGGTLEPLLAAGVTRIR WWWAHLVTVVGGSAALMVGFAAGMGLATGQVVGDTGVQVRDLLWAGLVQLPGVVVVAAAVVAIVCLVPRWSVPASWALLL AALVAGPMFGPGLKLPTWVQDLSPFTHSPQAPAVPVDAVPLLALGGAAVALAGAALLVLRRRDLALPA >Mature_547_residues STVSAPAPVDLAGTRRLVRLAVRRDRYTIPAWWAGLGLFVAATTAMFTEDLARQEDLLTETELVATNAGMRLIGLTSGPS VGGYLLHREFVTLAVLAAVMSTFAVIRHTRQNEELGRAEMLGSTVVGRQAGLAAGVLVALAADLGLALVLGAAIAVNGLS VEGAFLAGASVAAVGIVWVGLAAVTCQLSATTRGAAGIAMGALGVAFVLSGVGNMIGTVDEAGLRVASAWPAWLSPIGWG QQTRPFADALWWPLLLALAFAGLLLVVAVALGSRRDVGRGLWAQRRGPGHARRTLLSPTGLVWRLQRGVFLAWGVALTVF GLIFGSLTEQIQGLEGDAKEWWTEMGGTAEVVAAYQVSMIQMAGMFVAMYAVQALLRMRVDELGGTLEPLLAAGVTRIRW WWAHLVTVVGGSAALMVGFAAGMGLATGQVVGDTGVQVRDLLWAGLVQLPGVVVVAAAVVAIVCLVPRWSVPASWALLLA ALVAGPMFGPGLKLPTWVQDLSPFTHSPQAPAVPVDAVPLLALGGAAVALAGAALLVLRRRDLALPA
Specific function: Unknown
COG id: COG3559
COG function: function code M; Putative exporter of polyketide antibiotics
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56840; Mature: 56708
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTVSAPAPVDLAGTRRLVRLAVRRDRYTIPAWWAGLGLFVAATTAMFTEDLARQEDLLT CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ETELVATNAGMRLIGLTSGPSVGGYLLHREFVTLAVLAAVMSTFAVIRHTRQNEELGRAE HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH MLGSTVVGRQAGLAAGVLVALAADLGLALVLGAAIAVNGLSVEGAFLAGASVAAVGIVWV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHH GLAAVTCQLSATTRGAAGIAMGALGVAFVLSGVGNMIGTVDEAGLRVASAWPAWLSPIGW HHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCEECCCCHHHHCCCCC GQQTRPFADALWWPLLLALAFAGLLLVVAVALGSRRDVGRGLWAQRRGPGHARRTLLSPT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHCCCCCCHHHHHHCCCC GLVWRLQRGVFLAWGVALTVFGLIFGSLTEQIQGLEGDAKEWWTEMGGTAEVVAAYQVSM HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHH IQMAGMFVAMYAVQALLRMRVDELGGTLEPLLAAGVTRIRWWWAHLVTVVGGSAALMVGF HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH AAGMGLATGQVVGDTGVQVRDLLWAGLVQLPGVVVVAAAVVAIVCLVPRWSVPASWALLL HHCCCCCCCCEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH AALVAGPMFGPGLKLPTWVQDLSPFTHSPQAPAVPVDAVPLLALGGAAVALAGAALLVLR HHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHH RRDLALPA HHHCCCCC >Mature Secondary Structure STVSAPAPVDLAGTRRLVRLAVRRDRYTIPAWWAGLGLFVAATTAMFTEDLARQEDLLT CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ETELVATNAGMRLIGLTSGPSVGGYLLHREFVTLAVLAAVMSTFAVIRHTRQNEELGRAE HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH MLGSTVVGRQAGLAAGVLVALAADLGLALVLGAAIAVNGLSVEGAFLAGASVAAVGIVWV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHH GLAAVTCQLSATTRGAAGIAMGALGVAFVLSGVGNMIGTVDEAGLRVASAWPAWLSPIGW HHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCEECCCCHHHHCCCCC GQQTRPFADALWWPLLLALAFAGLLLVVAVALGSRRDVGRGLWAQRRGPGHARRTLLSPT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHCCCCCCHHHHHHCCCC GLVWRLQRGVFLAWGVALTVFGLIFGSLTEQIQGLEGDAKEWWTEMGGTAEVVAAYQVSM HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHH IQMAGMFVAMYAVQALLRMRVDELGGTLEPLLAAGVTRIRWWWAHLVTVVGGSAALMVGF HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH AAGMGLATGQVVGDTGVQVRDLLWAGLVQLPGVVVVAAAVVAIVCLVPRWSVPASWALLL HHCCCCCCCCEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH AALVAGPMFGPGLKLPTWVQDLSPFTHSPQAPAVPVDAVPLLALGGAAVALAGAALLVLR HHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHH RRDLALPA HHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA