| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715820
Identifier: 119715820
GI number: 119715820
Start: 1682076
End: 1683383
Strand: Direct
Name: 119715820
Synonym: Noca_1584
Alternate gene names: NA
Gene position: 1682076-1683383 (Clockwise)
Preceding gene: 119715819
Following gene: 119715823
Centisome position: 33.74
GC content: 67.51
Gene sequence:
>1308_bases ATGTACGGGACGAACGGCCGGCAGCTTCGAGAGGAGCTCACGACCCTCCTGCGGCAGCACCGGATCCAGCAGCGGCTTGG TGGGCCTGGCTCTCAGTCGATTCCGGTGACGACGACACCTGAGCAGCGCGAGGATCTCGGTCAGCTGATCCAGCGTTACC GGTACGCGGCGCTGGCGTGGTGCCTTCACGCAGTCGTGGCGGCGGACCCGCGACCGGGTCTCCAAGATACGTCGTCGCGC GGGCCGGCGGAGGAACTGCGGTTCCGGCTGACGCGCAGCATCAACATGTCGAACGCTGGCATGCCATCGCTCGACGATCT GTCCAAGCCGCAGGACTTCGCGATGGTCGAGAGCTGGCGACAGGTCGCTCGAGCCGCGGTCTTCGGCGAGCACGACTTCC CCGGCCTCATGGACCAGGGCCGGCTTTCCTACGCCGAGCGCATGACCGTCCTCAAGGACGCGGCTGAGGTGACGCGAGGC CTGGTCGTGCTCGACAAGCGGTACGAAAACATCCCCGGCTGGATCCCCATCCGGGAGCGCGCACGCCTCGACCGAGTTGC CCAGGCCTGCGCCACCTTCGCCCGTGACGTCGAGCCGGACTACTCGGTCGACCACAAGGGCTGGCGCCCGCCATCCGCCA CCATCGACGGCGGACCTCTGCCCGGGATCGGCGGCGTGCTCCAGGCCGAGCACAACATGCTCGTTCACCTGTCGAAGTTC CCAACCGCGCTCAACCTGCGACGGGTCATGGACGGCCAGCGGATTGTCTCCCACGAGGCAGCCCGGCGCGCGCCAAACGT CGCGCCCGAACTGATCGAGAAGTGGCTCGAGCGGGAGCAGACCTACAAGCGGCTAATCGACGAGACCCGAGACGTCGGCG GTTTGATCGGCCACGGGGGACTCGCCGCGGCAGAGGCCGCCAACGCTGTCAGCCGACTGCGGCGGGTTCACGTCGATGAG ATCTCGACGCCGGAGCCGTTGCGCGACCTCGACAAGCTGTTCACAAGGACCGACGCCCGCGTGGCGGCCATCATCGAGCA GGGTGTCGCCGAGCGGCTCTACTTCGTCAGCGTTAAGGCGCCTCGGATCGTAGACGGCACTGGCCATCTTGTGAGCCCTG GCCGAGAGCGATACGTCCCGATCCACTTGCCGGTCCAGACCGATCTGCTCGCGACCACCAGGCATCAGCTGCAACCGCCT CCCGTCGCGCCCGTTGCACCCACCGCGGCGAACGACGGCCGCGATCTGCTGAATGAGTCGATCCATCACCGACCCCCGCC GAGGTCAGGCCCCAATGCTGCTCGGTAG
Upstream 100 bases:
>100_bases AGGCGGCGATCGAGGAGCTCGTCGACCACGGCGTCGACGGCCTCCAAGTCGAGCTGATCCTCGCCAGGCTCGAGGACGCC CGGGCCCTGGACCGTCCGTG
Downstream 100 bases:
>100_bases CTGGCAGAGGCGCGGGCGGCTCTCCTTCCACAAGCGCTGTGAAGGCCGCAACCCCTACTCCTGGGGCTGCGTCTCCCGAG GCTTGGGCTTCGGGTCGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 435; Mature: 435
Protein sequence:
>435_residues MYGTNGRQLREELTTLLRQHRIQQRLGGPGSQSIPVTTTPEQREDLGQLIQRYRYAALAWCLHAVVAADPRPGLQDTSSR GPAEELRFRLTRSINMSNAGMPSLDDLSKPQDFAMVESWRQVARAAVFGEHDFPGLMDQGRLSYAERMTVLKDAAEVTRG LVVLDKRYENIPGWIPIRERARLDRVAQACATFARDVEPDYSVDHKGWRPPSATIDGGPLPGIGGVLQAEHNMLVHLSKF PTALNLRRVMDGQRIVSHEAARRAPNVAPELIEKWLEREQTYKRLIDETRDVGGLIGHGGLAAAEAANAVSRLRRVHVDE ISTPEPLRDLDKLFTRTDARVAAIIEQGVAERLYFVSVKAPRIVDGTGHLVSPGRERYVPIHLPVQTDLLATTRHQLQPP PVAPVAPTAANDGRDLLNESIHHRPPPRSGPNAAR
Sequences:
>Translated_435_residues MYGTNGRQLREELTTLLRQHRIQQRLGGPGSQSIPVTTTPEQREDLGQLIQRYRYAALAWCLHAVVAADPRPGLQDTSSR GPAEELRFRLTRSINMSNAGMPSLDDLSKPQDFAMVESWRQVARAAVFGEHDFPGLMDQGRLSYAERMTVLKDAAEVTRG LVVLDKRYENIPGWIPIRERARLDRVAQACATFARDVEPDYSVDHKGWRPPSATIDGGPLPGIGGVLQAEHNMLVHLSKF PTALNLRRVMDGQRIVSHEAARRAPNVAPELIEKWLEREQTYKRLIDETRDVGGLIGHGGLAAAEAANAVSRLRRVHVDE ISTPEPLRDLDKLFTRTDARVAAIIEQGVAERLYFVSVKAPRIVDGTGHLVSPGRERYVPIHLPVQTDLLATTRHQLQPP PVAPVAPTAANDGRDLLNESIHHRPPPRSGPNAAR >Mature_435_residues MYGTNGRQLREELTTLLRQHRIQQRLGGPGSQSIPVTTTPEQREDLGQLIQRYRYAALAWCLHAVVAADPRPGLQDTSSR GPAEELRFRLTRSINMSNAGMPSLDDLSKPQDFAMVESWRQVARAAVFGEHDFPGLMDQGRLSYAERMTVLKDAAEVTRG LVVLDKRYENIPGWIPIRERARLDRVAQACATFARDVEPDYSVDHKGWRPPSATIDGGPLPGIGGVLQAEHNMLVHLSKF PTALNLRRVMDGQRIVSHEAARRAPNVAPELIEKWLEREQTYKRLIDETRDVGGLIGHGGLAAAEAANAVSRLRRVHVDE ISTPEPLRDLDKLFTRTDARVAAIIEQGVAERLYFVSVKAPRIVDGTGHLVSPGRERYVPIHLPVQTDLLATTRHQLQPP PVAPVAPTAANDGRDLLNESIHHRPPPRSGPNAAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48300; Mature: 48300
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYGTNGRQLREELTTLLRQHRIQQRLGGPGSQSIPVTTTPEQREDLGQLIQRYRYAALAW CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH CLHAVVAADPRPGLQDTSSRGPAEELRFRLTRSINMSNAGMPSLDDLSKPQDFAMVESWR HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHH QVARAAVFGEHDFPGLMDQGRLSYAERMTVLKDAAEVTRGLVVLDKRYENIPGWIPIRER HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCCCCCCCCHHHH ARLDRVAQACATFARDVEPDYSVDHKGWRPPSATIDGGPLPGIGGVLQAEHNMLVHLSKF HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEEHHC PTALNLRRVMDGQRIVSHEAARRAPNVAPELIEKWLEREQTYKRLIDETRDVGGLIGHGG CCHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC LAAAEAANAVSRLRRVHVDEISTPEPLRDLDKLFTRTDARVAAIIEQGVAERLYFVSVKA HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEEEECC PRIVDGTGHLVSPGRERYVPIHLPVQTDLLATTRHQLQPPPVAPVAPTAANDGRDLLNES CEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH IHHRPPPRSGPNAAR HHCCCCCCCCCCCCC >Mature Secondary Structure MYGTNGRQLREELTTLLRQHRIQQRLGGPGSQSIPVTTTPEQREDLGQLIQRYRYAALAW CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH CLHAVVAADPRPGLQDTSSRGPAEELRFRLTRSINMSNAGMPSLDDLSKPQDFAMVESWR HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHH QVARAAVFGEHDFPGLMDQGRLSYAERMTVLKDAAEVTRGLVVLDKRYENIPGWIPIRER HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCCCCCCCCHHHH ARLDRVAQACATFARDVEPDYSVDHKGWRPPSATIDGGPLPGIGGVLQAEHNMLVHLSKF HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEEHHC PTALNLRRVMDGQRIVSHEAARRAPNVAPELIEKWLEREQTYKRLIDETRDVGGLIGHGG CCHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC LAAAEAANAVSRLRRVHVDEISTPEPLRDLDKLFTRTDARVAAIIEQGVAERLYFVSVKA HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEEEECC PRIVDGTGHLVSPGRERYVPIHLPVQTDLLATTRHQLQPPPVAPVAPTAANDGRDLLNES CEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH IHHRPPPRSGPNAAR HHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA