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The map label for this gene is yomI [H]

Identifier: 119715809

GI number: 119715809

Start: 1667791

End: 1668837

Strand: Direct

Name: yomI [H]

Synonym: Noca_1573

Alternate gene names: 119715809

Gene position: 1667791-1668837 (Clockwise)

Preceding gene: 119715808

Following gene: 119715810

Centisome position: 33.45

GC content: 69.34

Gene sequence:

>1047_bases
GTGGCCGGGAAGGCGACGTACGCCGTCGGGATGCTGGCGGTTCCGATCGCGGTCCCGATCATCTTCCTGCTCGTGGTCGG
CGGCCAGGCGGCGTCATCGTCCGCCTCGGCGTGCGGGCCGTCGATTGCCGGTGTCGTCGCTGAAGATCCCGATCTCGACG
ATGAGCAGATGCAGGTCGCTCGGCAGATCGTGGCCGCCGTGCGCGCCTTTCCCGCGACTGCCGACAAGCCGCATGCCGCT
GTGATCGCCCTGGCCACCGCGAGGCAGGAGTCCGGCATCCGGAACCTGGACTACGGCGACCGCGACTCGCTCGGCGCGTT
CCAGCAGCGCCCGTCGCAGGGGTGGGGCACGCCGGACCAGGTGATGAACGTTCCGCACGCCACGACGACGTTCCTGGAGC
ACCTCGTGCTCGTCCCCGACTGGGAGACGCGGCGCGTCACGGACGTCGCCGCCGACGTCCAGCGGCCGGCCAAGGAGTAC
CGGGGCTTGTACGAGCAGTGGGTTCCTCTCGCGACTCGCCTCACCGAACAGCTGTGGCCGCAGGCCGCGTCGCTGATGCC
AACGAACTCGTCGACCTGCACACAGCCGGCGACCGGCACCGGTGGCGTTGTCTACCCGGTGCCTCCGGCGTTCATCGGGG
CTGACAGCCACAACTGGGGAGGAAGCGGGAGCCACTGGAGCATTTGGCATACGGGCACGGACTTCTCCGTCCCGTGCGGG
ACACCCGTCCTCGCCGCGACGGCAGGCACCGTAGAGATCGAAACCGACCAGGCGTGGGCGGGCACGTGGCTCGTCAAGGT
CGTCACCAGCCCGGACTCGGTCGCCACCTGGTACGCGCACATGCAGAAGCTCGACGTGAGCCCGGGCGAGCAGGTCAGGG
CCGGGCAGCAACTCGGCGAGGTGGGCGCCCGTGGGAATGCCACCGGCTGCCACCTGCATTTCGAGGTGCACCTGCACAAC
GGCAGCATCTACGGACCCGACAACGTCGACCCGAGTCAGTGGCTCGCGCAGAACACCTCCCTGGCCAGCGCGACGCTGCG
AGGATGA

Upstream 100 bases:

>100_bases
CGCGCTGTGGATGGTCGGAGACCGTCGGTTCAAGGTCGCGACGGTCCTCTCGCCGATCGAACGGCGGCTGACGTTCACCA
ACGAAGCGGTGGCCTGAGCC

Downstream 100 bases:

>100_bases
CCGTGTGAAGAAAGCTGATGTCGAGGCCGCGTTCGTGCCCTACCTCCTCGAGCGCGGCTGGGATGTTGATATCGACAAGG
CGGACCACGCCGACGTGGTA

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MAGKATYAVGMLAVPIAVPIIFLLVVGGQAASSSASACGPSIAGVVAEDPDLDDEQMQVARQIVAAVRAFPATADKPHAA
VIALATARQESGIRNLDYGDRDSLGAFQQRPSQGWGTPDQVMNVPHATTTFLEHLVLVPDWETRRVTDVAADVQRPAKEY
RGLYEQWVPLATRLTEQLWPQAASLMPTNSSTCTQPATGTGGVVYPVPPAFIGADSHNWGGSGSHWSIWHTGTDFSVPCG
TPVLAATAGTVEIETDQAWAGTWLVKVVTSPDSVATWYAHMQKLDVSPGEQVRAGQQLGEVGARGNATGCHLHFEVHLHN
GSIYGPDNVDPSQWLAQNTSLASATLRG

Sequences:

>Translated_348_residues
MAGKATYAVGMLAVPIAVPIIFLLVVGGQAASSSASACGPSIAGVVAEDPDLDDEQMQVARQIVAAVRAFPATADKPHAA
VIALATARQESGIRNLDYGDRDSLGAFQQRPSQGWGTPDQVMNVPHATTTFLEHLVLVPDWETRRVTDVAADVQRPAKEY
RGLYEQWVPLATRLTEQLWPQAASLMPTNSSTCTQPATGTGGVVYPVPPAFIGADSHNWGGSGSHWSIWHTGTDFSVPCG
TPVLAATAGTVEIETDQAWAGTWLVKVVTSPDSVATWYAHMQKLDVSPGEQVRAGQQLGEVGARGNATGCHLHFEVHLHN
GSIYGPDNVDPSQWLAQNTSLASATLRG
>Mature_347_residues
AGKATYAVGMLAVPIAVPIIFLLVVGGQAASSSASACGPSIAGVVAEDPDLDDEQMQVARQIVAAVRAFPATADKPHAAV
IALATARQESGIRNLDYGDRDSLGAFQQRPSQGWGTPDQVMNVPHATTTFLEHLVLVPDWETRRVTDVAADVQRPAKEYR
GLYEQWVPLATRLTEQLWPQAASLMPTNSSTCTQPATGTGGVVYPVPPAFIGADSHNWGGSGSHWSIWHTGTDFSVPCGT
PVLAATAGTVEIETDQAWAGTWLVKVVTSPDSVATWYAHMQKLDVSPGEQVRAGQQLGEVGARGNATGCHLHFEVHLHNG
SIYGPDNVDPSQWLAQNTSLASATLRG

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 10 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=94, Percent_Identity=35.1063829787234, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR008258
- InterPro:   IPR016047
- InterPro:   IPR010090
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01551 Peptidase_M23; PF10145 PhageMin_Tail; PF01464 SLT [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 36834; Mature: 36703

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGKATYAVGMLAVPIAVPIIFLLVVGGQAASSSASACGPSIAGVVAEDPDLDDEQMQVA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHH
RQIVAAVRAFPATADKPHAAVIALATARQESGIRNLDYGDRDSLGAFQQRPSQGWGTPDQ
HHHHHHHHHCCCCCCCCCEEEEEEEHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHH
VMNVPHATTTFLEHLVLVPDWETRRVTDVAADVQRPAKEYRGLYEQWVPLATRLTEQLWP
HHCCCCHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAASLMPTNSSTCTQPATGTGGVVYPVPPAFIGADSHNWGGSGSHWSIWHTGTDFSVPCG
HHHHCCCCCCCCCCCCCCCCCCEEECCCCCEECCCCCCCCCCCCEEEEEECCCCCCCCCC
TPVLAATAGTVEIETDQAWAGTWLVKVVTSPDSVATWYAHMQKLDVSPGEQVRAGQQLGE
CCEEEECCCEEEEECCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
VGARGNATGCHLHFEVHLHNGSIYGPDNVDPSQWLAQNTSLASATLRG
HCCCCCCCEEEEEEEEEEECCEEECCCCCCHHHHHHCCCCHHHHCCCC
>Mature Secondary Structure 
AGKATYAVGMLAVPIAVPIIFLLVVGGQAASSSASACGPSIAGVVAEDPDLDDEQMQVA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHH
RQIVAAVRAFPATADKPHAAVIALATARQESGIRNLDYGDRDSLGAFQQRPSQGWGTPDQ
HHHHHHHHHCCCCCCCCCEEEEEEEHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHH
VMNVPHATTTFLEHLVLVPDWETRRVTDVAADVQRPAKEYRGLYEQWVPLATRLTEQLWP
HHCCCCHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAASLMPTNSSTCTQPATGTGGVVYPVPPAFIGADSHNWGGSGSHWSIWHTGTDFSVPCG
HHHHCCCCCCCCCCCCCCCCCCEEECCCCCEECCCCCCCCCCCCEEEEEECCCCCCCCCC
TPVLAATAGTVEIETDQAWAGTWLVKVVTSPDSVATWYAHMQKLDVSPGEQVRAGQQLGE
CCEEEECCCEEEEECCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
VGARGNATGCHLHFEVHLHNGSIYGPDNVDPSQWLAQNTSLASATLRG
HCCCCCCCEEEEEEEEEEECCEEECCCCCCHHHHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]