| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715808
Identifier: 119715808
GI number: 119715808
Start: 1666297
End: 1667787
Strand: Direct
Name: 119715808
Synonym: Noca_1572
Alternate gene names: NA
Gene position: 1666297-1667787 (Clockwise)
Preceding gene: 119715807
Following gene: 119715809
Centisome position: 33.42
GC content: 69.15
Gene sequence:
>1491_bases ATGGCCCGGCGTACGGCGTCGCGGTCGGTCGACCACCTGCTGACCGACTTCGGCACGCACCTGCCGCGGCAGGAGGCGGC GCCGCCCGCGCCGCCGCCCGACAAGCCGTTCCCGAAGGTCGTCGGCCGCCGTGGCCGCCGTCAGGCCGGACACGGCTGGG CGCCGACCCTGCCACCGCTGGCCGGCTACCAGATGACGTCGGAGCAGACCCCGGTCATGTGGCCGCTGATCGCCGGCGGC GGCCTCCCGCCCACGGGCGCACCGATGGGGTTCGACGTCCTGTCCGGCGGGTCCTTCTATTGCGACCCGATGGGCTGGGT GAACGACGACTCCATCCCGGTGACCAACCCGAACGTCTTCATCTTCGGCAAGCCCGGTCGTGGCAAGTCGGCCCTGGTCA AGGCGTTCATGCTCCGGATGATCCGCTTCGGCTACCGGTCGCTGGTCCTCGGCGACGTCAAGGACGAGTACGAGGACATC TCGCGGGCACTCGGCGTCGAGCCGTACCGGATCGGGCCCGGCCTGCCCGGTCGAATCAACCCGCTCGACGTGGGGCCGCT CGCACTCGATTGGGAGCGGCAGGACCGGGCGGAGACCGCCCGGCGCGGTGCGATCATCTTCAACCGGTGGCTGGCGCTGA TCCGCGGACTCGTCGGGTCGCAGCAGGTGCCGTTCACGCCGACAGAGGCGCGCATCATCACGCACGTCCTGCGTGACCTC ACGGGATGGACGACTGGCCAGACGACGTTGGCGCCGGTGACGATCCCGATGGTCTGGAAGGCCCTAGACGACCCGAGCGA AGCGCTCGTGGAAGCTTGCCGCTACGACTCTCGGCAGGGCTTCTTCGACAGCAGCCGGGCGTTGCGTGACGCCCTGGGCT CGTTGTGCCAGGGCGAACTAGAGGGGCTCTTCGACGCACCCTCGACGTTCCAGCCGAACTGGCGCGCCCCGATCCAGACG CTGTCGCTCAACACGCTCCACTCAGCCGGCAACGAGGCCGCCGTCGGCATCGCCCTGATGTGCCTCAACTCCTGGGGCCA GGGGATCCGCGAGATGGCCGAGCCCGGTGACCGCCGGATCGTGCTGCGTGACGAGGCATGGATGCAGACCCGCCTCGGCG TCGAGGCGGTCAAGACACTCGACTCCAACTTGCGGCTATCCCGAAATGACGGCGACGTCCAGCTGGTGACCTACCACAAG CCGTCCGACCCGCTCTCTGCCGGCGACTCCGGTTCGCAGGCGGCACAGATCGCCAAGGACCTGCTGCACCTTGCCGACGT GCGCATCCTGCTTGGGCAGGACGAGGAGGTCGCCAACGAGCTCGGCCACTTGCTCGGGCTGACACGGATGCAGCAGGACC TCGTCACCGGGTGGGCGATGCAGGACAAGGGCCGCGCGCTGTGGATGGTCGGAGACCGTCGGTTCAAGGTCGCGACGGTC CTCTCGCCGATCGAACGGCGGCTGACGTTCACCAACGAAGCGGTGGCCTGA
Upstream 100 bases:
>100_bases GATTCACGCCGCTGCCCCTCGACGGTGCCCACGACGCTGCGTTCGCGGCCGCCGTGATCCCGCTGGGCACCGGACTGCCG AAGCGGCGCCGGAGCTGACC
Downstream 100 bases:
>100_bases GCCGTGGCCGGGAAGGCGACGTACGCCGTCGGGATGCTGGCGGTTCCGATCGCGGTCCCGATCATCTTCCTGCTCGTGGT CGGCGGCCAGGCGGCGTCAT
Product: ATP-binding protein
Products: NA
Alternate protein names: AAA ATPase; ATPase; Type IV Secretory Pathway VirB4 Components-Like Protein; Type IV Secretory Pathway VirB4 Component-Like Protein
Number of amino acids: Translated: 496; Mature: 495
Protein sequence:
>496_residues MARRTASRSVDHLLTDFGTHLPRQEAAPPAPPPDKPFPKVVGRRGRRQAGHGWAPTLPPLAGYQMTSEQTPVMWPLIAGG GLPPTGAPMGFDVLSGGSFYCDPMGWVNDDSIPVTNPNVFIFGKPGRGKSALVKAFMLRMIRFGYRSLVLGDVKDEYEDI SRALGVEPYRIGPGLPGRINPLDVGPLALDWERQDRAETARRGAIIFNRWLALIRGLVGSQQVPFTPTEARIITHVLRDL TGWTTGQTTLAPVTIPMVWKALDDPSEALVEACRYDSRQGFFDSSRALRDALGSLCQGELEGLFDAPSTFQPNWRAPIQT LSLNTLHSAGNEAAVGIALMCLNSWGQGIREMAEPGDRRIVLRDEAWMQTRLGVEAVKTLDSNLRLSRNDGDVQLVTYHK PSDPLSAGDSGSQAAQIAKDLLHLADVRILLGQDEEVANELGHLLGLTRMQQDLVTGWAMQDKGRALWMVGDRRFKVATV LSPIERRLTFTNEAVA
Sequences:
>Translated_496_residues MARRTASRSVDHLLTDFGTHLPRQEAAPPAPPPDKPFPKVVGRRGRRQAGHGWAPTLPPLAGYQMTSEQTPVMWPLIAGG GLPPTGAPMGFDVLSGGSFYCDPMGWVNDDSIPVTNPNVFIFGKPGRGKSALVKAFMLRMIRFGYRSLVLGDVKDEYEDI SRALGVEPYRIGPGLPGRINPLDVGPLALDWERQDRAETARRGAIIFNRWLALIRGLVGSQQVPFTPTEARIITHVLRDL TGWTTGQTTLAPVTIPMVWKALDDPSEALVEACRYDSRQGFFDSSRALRDALGSLCQGELEGLFDAPSTFQPNWRAPIQT LSLNTLHSAGNEAAVGIALMCLNSWGQGIREMAEPGDRRIVLRDEAWMQTRLGVEAVKTLDSNLRLSRNDGDVQLVTYHK PSDPLSAGDSGSQAAQIAKDLLHLADVRILLGQDEEVANELGHLLGLTRMQQDLVTGWAMQDKGRALWMVGDRRFKVATV LSPIERRLTFTNEAVA >Mature_495_residues ARRTASRSVDHLLTDFGTHLPRQEAAPPAPPPDKPFPKVVGRRGRRQAGHGWAPTLPPLAGYQMTSEQTPVMWPLIAGGG LPPTGAPMGFDVLSGGSFYCDPMGWVNDDSIPVTNPNVFIFGKPGRGKSALVKAFMLRMIRFGYRSLVLGDVKDEYEDIS RALGVEPYRIGPGLPGRINPLDVGPLALDWERQDRAETARRGAIIFNRWLALIRGLVGSQQVPFTPTEARIITHVLRDLT GWTTGQTTLAPVTIPMVWKALDDPSEALVEACRYDSRQGFFDSSRALRDALGSLCQGELEGLFDAPSTFQPNWRAPIQTL SLNTLHSAGNEAAVGIALMCLNSWGQGIREMAEPGDRRIVLRDEAWMQTRLGVEAVKTLDSNLRLSRNDGDVQLVTYHKP SDPLSAGDSGSQAAQIAKDLLHLADVRILLGQDEEVANELGHLLGLTRMQQDLVTGWAMQDKGRALWMVGDRRFKVATVL SPIERRLTFTNEAVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54393; Mature: 54262
Theoretical pI: Translated: 7.24; Mature: 7.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARRTASRSVDHLLTDFGTHLPRQEAAPPAPPPDKPFPKVVGRRGRRQAGHGWAPTLPPL CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC AGYQMTSEQTPVMWPLIAGGGLPPTGAPMGFDVLSGGSFYCDPMGWVNDDSIPVTNPNVF CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEECCCCEEECCCCCCCCCCCCCCCCCEE IFGKPGRGKSALVKAFMLRMIRFGYRSLVLGDVKDEYEDISRALGVEPYRIGPGLPGRIN EEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCCCCCCCC PLDVGPLALDWERQDRAETARRGAIIFNRWLALIRGLVGSQQVPFTPTEARIITHVLRDL CCCCCCEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH TGWTTGQTTLAPVTIPMVWKALDDPSEALVEACRYDSRQGFFDSSRALRDALGSLCQGEL CCCCCCCCEECEEHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH EGLFDAPSTFQPNWRAPIQTLSLNTLHSAGNEAAVGIALMCLNSWGQGIREMAEPGDRRI HHHCCCCCCCCCCCCCCHHHEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE VLRDEAWMQTRLGVEAVKTLDSNLRLSRNDGDVQLVTYHKPSDPLSAGDSGSQAAQIAKD EEECHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHH LLHLADVRILLGQDEEVANELGHLLGLTRMQQDLVTGWAMQDKGRALWMVGDRRFKVATV HHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEHHHH LSPIERRLTFTNEAVA HHHHHHHHHHHHHCCC >Mature Secondary Structure ARRTASRSVDHLLTDFGTHLPRQEAAPPAPPPDKPFPKVVGRRGRRQAGHGWAPTLPPL CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC AGYQMTSEQTPVMWPLIAGGGLPPTGAPMGFDVLSGGSFYCDPMGWVNDDSIPVTNPNVF CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEECCCCEEECCCCCCCCCCCCCCCCCEE IFGKPGRGKSALVKAFMLRMIRFGYRSLVLGDVKDEYEDISRALGVEPYRIGPGLPGRIN EEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCCCCCCCC PLDVGPLALDWERQDRAETARRGAIIFNRWLALIRGLVGSQQVPFTPTEARIITHVLRDL CCCCCCEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH TGWTTGQTTLAPVTIPMVWKALDDPSEALVEACRYDSRQGFFDSSRALRDALGSLCQGEL CCCCCCCCEECEEHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH EGLFDAPSTFQPNWRAPIQTLSLNTLHSAGNEAAVGIALMCLNSWGQGIREMAEPGDRRI HHHCCCCCCCCCCCCCCHHHEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE VLRDEAWMQTRLGVEAVKTLDSNLRLSRNDGDVQLVTYHKPSDPLSAGDSGSQAAQIAKD EEECHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHH LLHLADVRILLGQDEEVANELGHLLGLTRMQQDLVTGWAMQDKGRALWMVGDRRFKVATV HHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEHHHH LSPIERRLTFTNEAVA HHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA