| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715767
Identifier: 119715767
GI number: 119715767
Start: 1626088
End: 1627305
Strand: Reverse
Name: 119715767
Synonym: Noca_1531
Alternate gene names: NA
Gene position: 1627305-1626088 (Counterclockwise)
Preceding gene: 119715768
Following gene: 119715761
Centisome position: 32.64
GC content: 71.35
Gene sequence:
>1218_bases GTGCGCAGGGTCAGCGTCGACGCGCAGCGGATAGTCGCCGCACAGGCCCTGCGCGCCGCCGGCTATGGCTGCACCGCCGT CCTGCTCGGCAGCCTGCTCGCAGCCCGCCACTATTCGCCGCTGACCACCGGGCTCGTCCTCGCGAGCGTCGTCGCGGGCA CGGCCTGGGGATCCCTCCTGTTGGGCCGCGTTGCCGACCGGGTGGGTCGGCGGCGCTGGTACGCCGCCATCTACCTCGGC GTCGCTCTCGCCGGGTTGGTGATGGCGTTCGGGCCGCCGCTGTGGCTGATCGTCATCCTCGCGTTAGCCGGCGGGCTGTC CACCGACGTCGTCGACAACGGACCGGCGACCACGCTGGAGCAGGTGATGCTCGCCGGTGAAGACTCCGCAGCGGCCGGCC GTTCCGGAGCACGTGTTTACGGGCTCTACAACGCCGTTGCCTCGATCGCGGGTGCCCTCGGCGCCCTCGCCGCCGGGCTT CCCACCAGGGTCGGGTTCGACCCGGCGGATCCAAAGCCGTTCGCGGTGCTCGTACCCCTCGGCCTCCTCGGGCTAGGCCT CGCGCTCGGCCTCAGCCCCCACGTCGAAGCCGAGCCGCGCAGCATCTTCGCATCCGACGAGTTGTCGGACGGTCGACGCA AGGTGCGACAGCTGGCGGCCCTGTTCGCAGTCGATGCCGGTGGCGGTGGCCTGGTCACCACCAGCTTCCTGGCCTACTAC CTCGCGCTGCGCTACGACGCCTCACCCTCGACTCTCGGCGTCCTGTTCTTCGCCACCTCCCTGCTCCAGGCCGCCTCCGT CTGGGTCGCGCCGCGACTGGCGGACCGGATCGGCCTGGTCCCGACGATGGTCTTCACGCACCTGCCCAGCAACATGCTGC TCGCGGCGATCGCGTTCGCCCCCACGCTGCCGGTCGCGATCATCCTCGTGCTGGCCCGAACTGCGCTGTCGCAGATGGAC GTGCCGACCCGGCAGGCACTCGTGATGAGTGTCGTCGACCCCAGCGAAAGGACTGCCGCAGCCGCGGTCACCAACGCCGC CCGCTACACGGTTCGGCCCGCCGGACCGCTGCTCGGCGGTGCCCTGCAGGGCGTTGCCCTCGGCCTGCCGCTGGTCGTCG CCGGCACCGTCAAGGGCGGCTACGACCTAGCGCTGTGGGGCTGGGCCCAGCACGCGAAGGTGACGAGTCCCAGCGCTCCA CCGGAATCAGCTGCCTGA
Upstream 100 bases:
>100_bases ATCGTGCTGATCTTCAAGCTCGGCTGGTCGACCATGCGCACCCTCGGCGTGTGCGCCGTCCTCGGCCTGATCGCGACCCT GGCGTTCTGAGGCGTCGGCG
Downstream 100 bases:
>100_bases ACTCCACAAACTGACCAAGCGAAATGGCCCTGACATGCGACGCGGACTGGTTGCGATTTCTACCGCATCCCATGCTGGTG CTCGCCGGCTGCTCCTGAGC
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Transporter Protein; Transporter Facilitator Family; Multidrug Efflux Permease; ABC Transporter Permease Protein; Sugar Transporter Related Protein; Transport Transmembrane Protein
Number of amino acids: Translated: 405; Mature: 405
Protein sequence:
>405_residues MRRVSVDAQRIVAAQALRAAGYGCTAVLLGSLLAARHYSPLTTGLVLASVVAGTAWGSLLLGRVADRVGRRRWYAAIYLG VALAGLVMAFGPPLWLIVILALAGGLSTDVVDNGPATTLEQVMLAGEDSAAAGRSGARVYGLYNAVASIAGALGALAAGL PTRVGFDPADPKPFAVLVPLGLLGLGLALGLSPHVEAEPRSIFASDELSDGRRKVRQLAALFAVDAGGGGLVTTSFLAYY LALRYDASPSTLGVLFFATSLLQAASVWVAPRLADRIGLVPTMVFTHLPSNMLLAAIAFAPTLPVAIILVLARTALSQMD VPTRQALVMSVVDPSERTAAAAVTNAARYTVRPAGPLLGGALQGVALGLPLVVAGTVKGGYDLALWGWAQHAKVTSPSAP PESAA
Sequences:
>Translated_405_residues MRRVSVDAQRIVAAQALRAAGYGCTAVLLGSLLAARHYSPLTTGLVLASVVAGTAWGSLLLGRVADRVGRRRWYAAIYLG VALAGLVMAFGPPLWLIVILALAGGLSTDVVDNGPATTLEQVMLAGEDSAAAGRSGARVYGLYNAVASIAGALGALAAGL PTRVGFDPADPKPFAVLVPLGLLGLGLALGLSPHVEAEPRSIFASDELSDGRRKVRQLAALFAVDAGGGGLVTTSFLAYY LALRYDASPSTLGVLFFATSLLQAASVWVAPRLADRIGLVPTMVFTHLPSNMLLAAIAFAPTLPVAIILVLARTALSQMD VPTRQALVMSVVDPSERTAAAAVTNAARYTVRPAGPLLGGALQGVALGLPLVVAGTVKGGYDLALWGWAQHAKVTSPSAP PESAA >Mature_405_residues MRRVSVDAQRIVAAQALRAAGYGCTAVLLGSLLAARHYSPLTTGLVLASVVAGTAWGSLLLGRVADRVGRRRWYAAIYLG VALAGLVMAFGPPLWLIVILALAGGLSTDVVDNGPATTLEQVMLAGEDSAAAGRSGARVYGLYNAVASIAGALGALAAGL PTRVGFDPADPKPFAVLVPLGLLGLGLALGLSPHVEAEPRSIFASDELSDGRRKVRQLAALFAVDAGGGGLVTTSFLAYY LALRYDASPSTLGVLFFATSLLQAASVWVAPRLADRIGLVPTMVFTHLPSNMLLAAIAFAPTLPVAIILVLARTALSQMD VPTRQALVMSVVDPSERTAAAAVTNAARYTVRPAGPLLGGALQGVALGLPLVVAGTVKGGYDLALWGWAQHAKVTSPSAP PESAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6322584, Length=424, Percent_Identity=27.122641509434, Blast_Score=114, Evalue=2e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41426; Mature: 41426
Theoretical pI: Translated: 9.94; Mature: 9.94
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRVSVDAQRIVAAQALRAAGYGCTAVLLGSLLAARHYSPLTTGLVLASVVAGTAWGSLL CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH LGRVADRVGRRRWYAAIYLGVALAGLVMAFGPPLWLIVILALAGGLSTDVVDNGPATTLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH QVMLAGEDSAAAGRSGARVYGLYNAVASIAGALGALAAGLPTRVGFDPADPKPFAVLVPL HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHH GLLGLGLALGLSPHVEAEPRSIFASDELSDGRRKVRQLAALFAVDAGGGGLVTTSFLAYY HHHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHEECCCCCHHHHHHHHHH LALRYDASPSTLGVLFFATSLLQAASVWVAPRLADRIGLVPTMVFTHLPSNMLLAAIAFA HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH PTLPVAIILVLARTALSQMDVPTRQALVMSVVDPSERTAAAAVTNAARYTVRPAGPLLGG HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHEEECCCCCHHHH ALQGVALGLPLVVAGTVKGGYDLALWGWAQHAKVTSPSAPPESAA HHHHHHHCCCEEEEEECCCCCEEEEECCHHCCCCCCCCCCCCCCC >Mature Secondary Structure MRRVSVDAQRIVAAQALRAAGYGCTAVLLGSLLAARHYSPLTTGLVLASVVAGTAWGSLL CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH LGRVADRVGRRRWYAAIYLGVALAGLVMAFGPPLWLIVILALAGGLSTDVVDNGPATTLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH QVMLAGEDSAAAGRSGARVYGLYNAVASIAGALGALAAGLPTRVGFDPADPKPFAVLVPL HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHH GLLGLGLALGLSPHVEAEPRSIFASDELSDGRRKVRQLAALFAVDAGGGGLVTTSFLAYY HHHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHEECCCCCHHHHHHHHHH LALRYDASPSTLGVLFFATSLLQAASVWVAPRLADRIGLVPTMVFTHLPSNMLLAAIAFA HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH PTLPVAIILVLARTALSQMDVPTRQALVMSVVDPSERTAAAAVTNAARYTVRPAGPLLGG HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHEEECCCCCHHHH ALQGVALGLPLVVAGTVKGGYDLALWGWAQHAKVTSPSAPPESAA HHHHHHHCCCEEEEEECCCCCEEEEECCHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA