BacMap

Definition	Nocardioides sp. JS614 chromosome, complete genome.
Accession	NC_008699
Length	4,985,871

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The map label for this gene is ygfF [H]

Identifier: 119715738

GI number: 119715738

Start: 1592823

End: 1593578

Strand: Direct

Name: ygfF [H]

Synonym: Noca_1502

Alternate gene names: 119715738

Gene position: 1592823-1593578 (Clockwise)

Preceding gene: 119715737

Following gene: 119715739

Centisome position: 31.95

GC content: 78.44

Gene sequence:

>756_bases
GTGACCGCGGCGCCGACCCCGGTCACGCTGATCACCGGCGGCACCCGCGGGATCGGCGCGGCCACGGCGCTCCGGCTCGC
CAGGGACGGCCACGACCTGGTGCTCGGCTACGCCCGCGACGTCCGCGCCGCCGAGGAGGCGCGCCTCGCGGCCGAGGACG
CGGGGGCCCGCTGCGTCGTGGTGCGCGCCGACCTCACCGCGCCGGACGGCGTCGCGGAGCTGTTCGCCCGGGCCGCCCAG
CACGGCCGGCTGACCGGCGTCGTCAACAATGCCGGCGCCACCCTGCACCTCGGCCCGCTGGCCGAGACCCCGGTGGAGGT
CGTGCAGGCGACCGTCGACCTCAACCTCACCGCCGCTCTCCTCGTGGCGCGCGCCGCCGTCCGCGCGCTGGGAACGTCGT
ACGGCGGTGCCGGCGGCGTGCTCGTCAACGTCAGCTCGGGTGCGGCGACGCTCGGCGCGCCCGGCGAGTACGTGCAGTAC
GCCGCGGCCAAGGCCGGGGTCGACGCGCTGACCGTCGGGCTGGCGCAGGAGGTCGCGGGCGAGGGGATCCGCGTCGTCGG
GGTGGCGCCGGGCATCGTGCGGACCCGGATCCACGCCGACGCGGGCGAGCCCGATCGGGTCGACCGGGTCGGGCGGCTGG
TGCCGCTCGGTCGCGCCGGCGAGCCGGGGGAGGTGGCCGACGCGGTCGCCTGGCTGATGAGCGCAGAGGCGACGTACGTC
ACCGGCACGACGCTGCGGGTGGCCGGCGGCCGCTGA

Upstream 100 bases:

>100_bases
TGCCCGCCGGGACCTGGCAGCGGACCGTCCCCGCGGAGGCGGACGCGCTCGTCAGCTGCCTGGTCTCCCCGGGCTTCGAC
TTCGACGACTTCGAGCTGGC

Downstream 100 bases:

>100_bases
CCGCCGGAGCCGTGCGCCGAGAACCCTTGTCGTTTGGTCACCAACGACACGTCTCGGGCCGGTCTTGTTGTCGTTTGGTC
ACCAACCGAGTGAGCTTGCG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MTAAPTPVTLITGGTRGIGAATALRLARDGHDLVLGYARDVRAAEEARLAAEDAGARCVVVRADLTAPDGVAELFARAAQ
HGRLTGVVNNAGATLHLGPLAETPVEVVQATVDLNLTAALLVARAAVRALGTSYGGAGGVLVNVSSGAATLGAPGEYVQY
AAAKAGVDALTVGLAQEVAGEGIRVVGVAPGIVRTRIHADAGEPDRVDRVGRLVPLGRAGEPGEVADAVAWLMSAEATYV
TGTTLRVAGGR

Sequences:

>Translated_251_residues
MTAAPTPVTLITGGTRGIGAATALRLARDGHDLVLGYARDVRAAEEARLAAEDAGARCVVVRADLTAPDGVAELFARAAQ
HGRLTGVVNNAGATLHLGPLAETPVEVVQATVDLNLTAALLVARAAVRALGTSYGGAGGVLVNVSSGAATLGAPGEYVQY
AAAKAGVDALTVGLAQEVAGEGIRVVGVAPGIVRTRIHADAGEPDRVDRVGRLVPLGRAGEPGEVADAVAWLMSAEATYV
TGTTLRVAGGR
>Mature_250_residues
TAAPTPVTLITGGTRGIGAATALRLARDGHDLVLGYARDVRAAEEARLAAEDAGARCVVVRADLTAPDGVAELFARAAQH
GRLTGVVNNAGATLHLGPLAETPVEVVQATVDLNLTAALLVARAAVRALGTSYGGAGGVLVNVSSGAATLGAPGEYVQYA
AAKAGVDALTVGLAQEVAGEGIRVVGVAPGIVRTRIHADAGEPDRVDRVGRLVPLGRAGEPGEVADAVAWLMSAEATYVT
GTTLRVAGGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=36.734693877551, Blast_Score=111, Evalue=6e-25,
Organism=Homo sapiens, GI32483357, Length=245, Percent_Identity=31.4285714285714, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI15277342, Length=267, Percent_Identity=31.8352059925094, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=28.4046692607004, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI4758504, Length=254, Percent_Identity=32.6771653543307, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI10190704, Length=248, Percent_Identity=31.8548387096774, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI59889578, Length=200, Percent_Identity=34, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI7705925, Length=165, Percent_Identity=32.7272727272727, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=28.8, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=29.6, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=43.265306122449, Blast_Score=204, Evalue=5e-54,
Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=32, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=34.1269841269841, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=33.8775510204082, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=30.7377049180328, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=30.1204819277108, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=30.241935483871, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=27.710843373494, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI2367365, Length=249, Percent_Identity=31.7269076305221, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787526, Length=254, Percent_Identity=27.1653543307087, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786812, Length=250, Percent_Identity=29.6, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787820, Length=247, Percent_Identity=25.1012145748988, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=27.2357723577236, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=260, Percent_Identity=31.5384615384615, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI71994604, Length=256, Percent_Identity=32.8125, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17559104, Length=269, Percent_Identity=31.5985130111524, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=31.3253012048193, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI25147288, Length=246, Percent_Identity=31.3008130081301, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=30.1526717557252, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=30, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=31.5589353612167, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17560150, Length=255, Percent_Identity=30.1960784313725, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=28.9156626506024, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=30.0751879699248, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI72000259, Length=257, Percent_Identity=29.5719844357977, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17538480, Length=259, Percent_Identity=29.3436293436293, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17562990, Length=255, Percent_Identity=29.8039215686275, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17562910, Length=260, Percent_Identity=28.0769230769231, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=253, Percent_Identity=30.0395256916996, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=254, Percent_Identity=27.9527559055118, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=28.4046692607004, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=30.1960784313725, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=260, Percent_Identity=30, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=27.4809160305344, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=30.2681992337165, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=28.6259541984733, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=29.2307692307692, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17536651, Length=256, Percent_Identity=27.34375, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=275, Percent_Identity=28.7272727272727, Blast_Score=67, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=30.5699481865285, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=215, Percent_Identity=27.4418604651163, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=35.4581673306773, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=33.0739299610895, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=36.1788617886179, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=33.9920948616601, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI21357041, Length=258, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI21355319, Length=254, Percent_Identity=31.496062992126, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI17737361, Length=252, Percent_Identity=30.5555555555556, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24643142, Length=244, Percent_Identity=31.9672131147541, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24644337, Length=220, Percent_Identity=30.9090909090909, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24641232, Length=204, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25091; Mature: 24960

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAAPTPVTLITGGTRGIGAATALRLARDGHDLVLGYARDVRAAEEARLAAEDAGARCVV
CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCEEEE
VRADLTAPDGVAELFARAAQHGRLTGVVNNAGATLHLGPLAETPVEVVQATVDLNLTAAL
EEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCCHHHHHHHHHCCCHHHHH
LVARAAVRALGTSYGGAGGVLVNVSSGAATLGAPGEYVQYAAAKAGVDALTVGLAQEVAG
HHHHHHHHHHHCCCCCCCCEEEEECCCCEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHC
EGIRVVGVAPGIVRTRIHADAGEPDRVDRVGRLVPLGRAGEPGEVADAVAWLMSAEATYV
CCEEEEEECCCCEEEEEECCCCCCHHHHHHHCEEECCCCCCCCHHHHHHHHHHHCCCEEE
TGTTLRVAGGR
ECCEEEECCCC
>Mature Secondary Structure 
TAAPTPVTLITGGTRGIGAATALRLARDGHDLVLGYARDVRAAEEARLAAEDAGARCVV
CCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCEEEE
VRADLTAPDGVAELFARAAQHGRLTGVVNNAGATLHLGPLAETPVEVVQATVDLNLTAAL
EEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCCHHHHHHHHHCCCHHHHH
LVARAAVRALGTSYGGAGGVLVNVSSGAATLGAPGEYVQYAAAKAGVDALTVGLAQEVAG
HHHHHHHHHHHCCCCCCCCEEEEECCCCEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHC
EGIRVVGVAPGIVRTRIHADAGEPDRVDRVGRLVPLGRAGEPGEVADAVAWLMSAEATYV
CCEEEEEECCCCEEEEEECCCCCCHHHHHHHCEEECCCCCCCCHHHHHHHHHHHCCCEEE
TGTTLRVAGGR
ECCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 7764507 [H]