| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715715
Identifier: 119715715
GI number: 119715715
Start: 1565521
End: 1566843
Strand: Direct
Name: 119715715
Synonym: Noca_1479
Alternate gene names: NA
Gene position: 1565521-1566843 (Clockwise)
Preceding gene: 119715714
Following gene: 119715716
Centisome position: 31.4
GC content: 78.91
Gene sequence:
>1323_bases ATGAGCCCGCTCCCGCCGGGCCGGGGCGGTCCGGCGTCCTGGCGGCCGACCACCGCGCTGGGCCGGGCCCTCGTGGTGGG CGGGCTCGGCGTGGTCGGCGCGCTGCTGTCCGGTGAGCCCGCGGTCGTCGTGCTCGCCGCGCCGTTCGTCATGTTGGCGG CGCTGGGGGTGGCGCACCGGCCCACCCGCGAGCCCGTCCTCGACTCCCGGCTCGACCACCTCACGCTGCGCGAGGGCGTC GGCACCACCTCGCGGCTGAGCGTGGCCGGCGCCGAGGACGCCGAGTACCTCGTGCGGGTCACCGGGCAGCCGCCGTACGT CGTGATGCGCCCCAGCGGCGGCCGGGTCGGCCGGCTGCTCGCCGGGGGGCAGGTGCCCGAGGTCGAGATCAGCCCGCGCC GCTGGGGCCGGCGGATGCTGGGGGAGGAGAAGGTCGCGCTCTACACCCCGTGGGCGGGCTACCGCTTCGGCCCGGTCGGG ATCGGCGGCCAGTGGACGCGGGTGCTGCCGACGACCGCGCCGTACGACTCGCGCGCCGAGGCCCCGCAGCCGCTCGGCCT GGTCGGCGCGCACCGCTCGCGGCGCACCGGCAGCGGCACCGAGCTGGCGGGGATCCGGCCGTTCCAGCCCGGCGACCGGC TCCGGCGGGTCAACTGGCGGGTCTCGCTGCGCACCCGCGACCTGCACGTCGTGACCACCCGGGCCGAGGAGGACACCGGG GTGCTGCTGGTGCTCGACGCGCTCGCCGACCACGGCGCCTCCGACGGCGTCGACGGCGCGGCCAGCAGCCTGGACCTCGG CGTCCGTGCGGCCTCCGCGATCGCCGAGCACCACGTGCGCCGGGGCGACCGGGTCGCGCTGCGGGTGGTCGGCCGCGGCC ACGAGCAGGTCGGGTACGGCGCCGGTCCGCGGCACCTGCGCCGGATCCAGGACCAACTGGCGACCGTGCGGATCGGGGTC GCCGCCGAGCCCGACTCCGGCGTCCTGCAGCTCGGCGTGACCGGCGGCGTCGTCGTCGTGGTGCTCTCCCCGATGCTCGC CGAGCCGGTCGCCACCGTCGCCGCGACCCTGACCCGCCGCGGCGTGGCGGTGCTGGTCGTCGACACGCTCCCGCCCGACC CCCGGCCCGACCTCCCCGGGGACGCCGACCCCACGCTCGCCGCGCTGGCCTGGCGGATGCGGATGGTGGAGCGCTCGGTG GTGCTCGACCGGCTCGCCGCCCTCGGCTGCCCGGTCGTCGCCTGGCGCGGGCCGGGCACCATCGACGACGTGCTGCGCCG CCTGGCCCGCCGCGGCCGGCTCCCGCGGGTGGTGGGCCGGTGA
Upstream 100 bases:
>100_bases CGGTCAAGCCGGAGCTCTGGATGTCGGATGCCAGCGGCCGTCGCGTGGTCGACGCGGTCCTCGGCCAGGTGCCGACCCCG ACCACGCTGGACGGGCGCCG
Downstream 100 bases:
>100_bases ACCCCCTGCGGGGGTACGGCGAGCCGGACGACTGGGCCCGCTCCCAGGTCGCGCTGCGGATGCTGGTCCTGGCCGGGCCG GTCGTGGCGGTGCTCGCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 440; Mature: 439
Protein sequence:
>440_residues MSPLPPGRGGPASWRPTTALGRALVVGGLGVVGALLSGEPAVVVLAAPFVMLAALGVAHRPTREPVLDSRLDHLTLREGV GTTSRLSVAGAEDAEYLVRVTGQPPYVVMRPSGGRVGRLLAGGQVPEVEISPRRWGRRMLGEEKVALYTPWAGYRFGPVG IGGQWTRVLPTTAPYDSRAEAPQPLGLVGAHRSRRTGSGTELAGIRPFQPGDRLRRVNWRVSLRTRDLHVVTTRAEEDTG VLLVLDALADHGASDGVDGAASSLDLGVRAASAIAEHHVRRGDRVALRVVGRGHEQVGYGAGPRHLRRIQDQLATVRIGV AAEPDSGVLQLGVTGGVVVVVLSPMLAEPVATVAATLTRRGVAVLVVDTLPPDPRPDLPGDADPTLAALAWRMRMVERSV VLDRLAALGCPVVAWRGPGTIDDVLRRLARRGRLPRVVGR
Sequences:
>Translated_440_residues MSPLPPGRGGPASWRPTTALGRALVVGGLGVVGALLSGEPAVVVLAAPFVMLAALGVAHRPTREPVLDSRLDHLTLREGV GTTSRLSVAGAEDAEYLVRVTGQPPYVVMRPSGGRVGRLLAGGQVPEVEISPRRWGRRMLGEEKVALYTPWAGYRFGPVG IGGQWTRVLPTTAPYDSRAEAPQPLGLVGAHRSRRTGSGTELAGIRPFQPGDRLRRVNWRVSLRTRDLHVVTTRAEEDTG VLLVLDALADHGASDGVDGAASSLDLGVRAASAIAEHHVRRGDRVALRVVGRGHEQVGYGAGPRHLRRIQDQLATVRIGV AAEPDSGVLQLGVTGGVVVVVLSPMLAEPVATVAATLTRRGVAVLVVDTLPPDPRPDLPGDADPTLAALAWRMRMVERSV VLDRLAALGCPVVAWRGPGTIDDVLRRLARRGRLPRVVGR >Mature_439_residues SPLPPGRGGPASWRPTTALGRALVVGGLGVVGALLSGEPAVVVLAAPFVMLAALGVAHRPTREPVLDSRLDHLTLREGVG TTSRLSVAGAEDAEYLVRVTGQPPYVVMRPSGGRVGRLLAGGQVPEVEISPRRWGRRMLGEEKVALYTPWAGYRFGPVGI GGQWTRVLPTTAPYDSRAEAPQPLGLVGAHRSRRTGSGTELAGIRPFQPGDRLRRVNWRVSLRTRDLHVVTTRAEEDTGV LLVLDALADHGASDGVDGAASSLDLGVRAASAIAEHHVRRGDRVALRVVGRGHEQVGYGAGPRHLRRIQDQLATVRIGVA AEPDSGVLQLGVTGGVVVVVLSPMLAEPVATVAATLTRRGVAVLVVDTLPPDPRPDLPGDADPTLAALAWRMRMVERSVV LDRLAALGCPVVAWRGPGTIDDVLRRLARRGRLPRVVGR
Specific function: Unknown
COG id: COG1721
COG function: function code R; Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46569; Mature: 46438
Theoretical pI: Translated: 11.61; Mature: 11.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPLPPGRGGPASWRPTTALGRALVVGGLGVVGALLSGEPAVVVLAAPFVMLAALGVAHR CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCC PTREPVLDSRLDHLTLREGVGTTSRLSVAGAEDAEYLVRVTGQPPYVVMRPSGGRVGRLL CCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCEEEEE AGGQVPEVEISPRRWGRRMLGEEKVALYTPWAGYRFGPVGIGGQWTRVLPTTAPYDSRAE ECCCCCCEEECHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCCEEEECCCCCCCCCCCC APQPLGLVGAHRSRRTGSGTELAGIRPFQPGDRLRRVNWRVSLRTRDLHVVTTRAEEDTG CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEEEEEEECEEEEEEECCCCCCC VLLVLDALADHGASDGVDGAASSLDLGVRAASAIAEHHVRRGDRVALRVVGRGHEQVGYG EEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHCCCC AGPRHLRRIQDQLATVRIGVAAEPDSGVLQLGVTGGVVVVVLSPMLAEPVATVAATLTRR CCHHHHHHHHHHHHEEEEEEEECCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHC GVAVLVVDTLPPDPRPDLPGDADPTLAALAWRMRMVERSVVLDRLAALGCPVVAWRGPGT CEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC IDDVLRRLARRGRLPRVVGR HHHHHHHHHHCCCCCHHCCC >Mature Secondary Structure SPLPPGRGGPASWRPTTALGRALVVGGLGVVGALLSGEPAVVVLAAPFVMLAALGVAHR CCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCC PTREPVLDSRLDHLTLREGVGTTSRLSVAGAEDAEYLVRVTGQPPYVVMRPSGGRVGRLL CCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCEEEEE AGGQVPEVEISPRRWGRRMLGEEKVALYTPWAGYRFGPVGIGGQWTRVLPTTAPYDSRAE ECCCCCCEEECHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCCEEEECCCCCCCCCCCC APQPLGLVGAHRSRRTGSGTELAGIRPFQPGDRLRRVNWRVSLRTRDLHVVTTRAEEDTG CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEEEEEEECEEEEEEECCCCCCC VLLVLDALADHGASDGVDGAASSLDLGVRAASAIAEHHVRRGDRVALRVVGRGHEQVGYG EEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHCCCC AGPRHLRRIQDQLATVRIGVAAEPDSGVLQLGVTGGVVVVVLSPMLAEPVATVAATLTRR CCHHHHHHHHHHHHEEEEEEEECCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHC GVAVLVVDTLPPDPRPDLPGDADPTLAALAWRMRMVERSVVLDRLAALGCPVVAWRGPGT CEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC IDDVLRRLARRGRLPRVVGR HHHHHHHHHHCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA