| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715686
Identifier: 119715686
GI number: 119715686
Start: 1537051
End: 1538250
Strand: Direct
Name: 119715686
Synonym: Noca_1450
Alternate gene names: NA
Gene position: 1537051-1538250 (Clockwise)
Preceding gene: 119715685
Following gene: 119715687
Centisome position: 30.83
GC content: 70.33
Gene sequence:
>1200_bases GTGATCGTGAGCACTCTCCGGATCCCGTACGTCGCCGTCCTGGTCCTCCTGAGCGCGCTCGCCGTCGCCCTGCCGGCGGC GGCGCCCGCGGCCGCGCCGGCGCGGACGGCCGCGCCGTACGCCGCGAAGGTCGGCAGCTACGAGCCGCCCGCGGGCCCCA GCTTCAACAACCCGCTCGGCGCGCCCTGGCAGCAGCGCAAGCTGCTCCAGCAGGTGATCCGCACGATCAACAGCTCGCCC GCCGGCTCGACCATCCGGATGGCCGTCTATTCCTTCGGTGACGGCCAGACCGCCGACGCCCTGCTCGCGGCCCACGCCCG CGGGGTCAGGGTGAAGCTGGTCTTCGCCGGCGAGAACGTCTACCCCGCGATGGCGCGGCTGCGCAACGCGCTCGGCACCG ACACCACCCAGCCGTCGTTCGTCGTGATCTGCCAGCACAGCTGCCGCGGGGAGCAGGGGCAGATGCACGCCAAGTACTTC TCGTTCACCGCTGCGGGATCGGCCCGCTGGATCACGATGGTCGGCTCGGTGAACCTCACGCAGTACAACGCGCAGGACCA GTGGAACGACCTCTACACCCGGGTCGACGACCGACCGTACTTCCGCGCCTACGGACGGTGGTTCGGGCAGCTCAAGAACG ACGAGCCCGTCGCGAAGCAGTACGTCCACAAGGCGACGGCGACCGCCGACATCCGGATGACTCCGGTCGACCTCACGGCC GAGACCGACCCGATCGCCGATGCGCTGGGCCGGATCCGCTGCGAGGTGACGATGGGGGAGCTCGACCCGGAGAGCCCGAC CCCGGACGAGGTCGTGGCGACGGCGCTCTACATCAACACCCACGCGTGGAACGAGGAGCGTGGCAAGGCGCTCGCCTGGC AGGTCGTGGGGCTGCGCTCCGACGGCTGCGACGTGAAGGTGTTCTACGGGACCGGCCTGGGGGCGGCGGTCCGGTCCATC CTCGGCAACAACGGGGTGAGCCTGCGCAAGGGGAACCACCGGGGCATCCGCACCCATCAGAAGGTGATGATCGTCGATGG CGCGTACGGCGACGACCTCGACACCGTGCGGGCCTGGACCGGCTCCCAGAACTGGAGCGACCGGGCGGCCAAGCGCGACG ACCTGATCGTCCAGATCAACGACGAGGCGGACGCGCAGCGGTACGTCGACCGGTTCCTGTGGATGTGGGACCGGGCCTAG
Upstream 100 bases:
>100_bases GGCGCTGACCCGGCCACCACTGGGTCGGACCGGATCGGACGGCGCGCTCCGACCTGCCCGAAAGGGCAGGTGGTGACGTG AGGGACTGGTGTGACAATGG
Downstream 100 bases:
>100_bases CTTCCCGGCCCGGCTGGATGTGGGCGAGCGCGGCCCGCGGGATACGATCACGCGTCCCCACGTACCGTCGACCCGCAGGA GCCTGCCGCCCGTGAGGAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 399; Mature: 399
Protein sequence:
>399_residues MIVSTLRIPYVAVLVLLSALAVALPAAAPAAAPARTAAPYAAKVGSYEPPAGPSFNNPLGAPWQQRKLLQQVIRTINSSP AGSTIRMAVYSFGDGQTADALLAAHARGVRVKLVFAGENVYPAMARLRNALGTDTTQPSFVVICQHSCRGEQGQMHAKYF SFTAAGSARWITMVGSVNLTQYNAQDQWNDLYTRVDDRPYFRAYGRWFGQLKNDEPVAKQYVHKATATADIRMTPVDLTA ETDPIADALGRIRCEVTMGELDPESPTPDEVVATALYINTHAWNEERGKALAWQVVGLRSDGCDVKVFYGTGLGAAVRSI LGNNGVSLRKGNHRGIRTHQKVMIVDGAYGDDLDTVRAWTGSQNWSDRAAKRDDLIVQINDEADAQRYVDRFLWMWDRA
Sequences:
>Translated_399_residues MIVSTLRIPYVAVLVLLSALAVALPAAAPAAAPARTAAPYAAKVGSYEPPAGPSFNNPLGAPWQQRKLLQQVIRTINSSP AGSTIRMAVYSFGDGQTADALLAAHARGVRVKLVFAGENVYPAMARLRNALGTDTTQPSFVVICQHSCRGEQGQMHAKYF SFTAAGSARWITMVGSVNLTQYNAQDQWNDLYTRVDDRPYFRAYGRWFGQLKNDEPVAKQYVHKATATADIRMTPVDLTA ETDPIADALGRIRCEVTMGELDPESPTPDEVVATALYINTHAWNEERGKALAWQVVGLRSDGCDVKVFYGTGLGAAVRSI LGNNGVSLRKGNHRGIRTHQKVMIVDGAYGDDLDTVRAWTGSQNWSDRAAKRDDLIVQINDEADAQRYVDRFLWMWDRA >Mature_399_residues MIVSTLRIPYVAVLVLLSALAVALPAAAPAAAPARTAAPYAAKVGSYEPPAGPSFNNPLGAPWQQRKLLQQVIRTINSSP AGSTIRMAVYSFGDGQTADALLAAHARGVRVKLVFAGENVYPAMARLRNALGTDTTQPSFVVICQHSCRGEQGQMHAKYF SFTAAGSARWITMVGSVNLTQYNAQDQWNDLYTRVDDRPYFRAYGRWFGQLKNDEPVAKQYVHKATATADIRMTPVDLTA ETDPIADALGRIRCEVTMGELDPESPTPDEVVATALYINTHAWNEERGKALAWQVVGLRSDGCDVKVFYGTGLGAAVRSI LGNNGVSLRKGNHRGIRTHQKVMIVDGAYGDDLDTVRAWTGSQNWSDRAAKRDDLIVQINDEADAQRYVDRFLWMWDRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43702; Mature: 43702
Theoretical pI: Translated: 8.55; Mature: 8.55
Prosite motif: PS50035 PLD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIVSTLRIPYVAVLVLLSALAVALPAAAPAAAPARTAAPYAAKVGSYEPPAGPSFNNPLG CEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC APWQQRKLLQQVIRTINSSPAGSTIRMAVYSFGDGQTADALLAAHARGVRVKLVFAGENV CCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCEEEEEEEECCCC YPAMARLRNALGTDTTQPSFVVICQHSCRGEQGQMHAKYFSFTAAGSARWITMVGSVNLT CHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCEEEEEEECEEEE QYNAQDQWNDLYTRVDDRPYFRAYGRWFGQLKNDEPVAKQYVHKATATADIRMTPVDLTA EECCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEECEECCC ETDPIADALGRIRCEVTMGELDPESPTPDEVVATALYINTHAWNEERGKALAWQVVGLRS CCCHHHHHHHCEEEEEEECCCCCCCCCHHHHEEEEEEEEECCCCCCCCCEEEEEEEEECC DGCDVKVFYGTGLGAAVRSILGNNGVSLRKGNHRGIRTHQKVMIVDGAYGDDLDTVRAWT CCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEEECCCCCCHHHHEEEC GSQNWSDRAAKRDDLIVQINDEADAQRYVDRFLWMWDRA CCCCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MIVSTLRIPYVAVLVLLSALAVALPAAAPAAAPARTAAPYAAKVGSYEPPAGPSFNNPLG CEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC APWQQRKLLQQVIRTINSSPAGSTIRMAVYSFGDGQTADALLAAHARGVRVKLVFAGENV CCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCEEEEEEEECCCC YPAMARLRNALGTDTTQPSFVVICQHSCRGEQGQMHAKYFSFTAAGSARWITMVGSVNLT CHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCEEEEEEECEEEE QYNAQDQWNDLYTRVDDRPYFRAYGRWFGQLKNDEPVAKQYVHKATATADIRMTPVDLTA EECCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEECEECCC ETDPIADALGRIRCEVTMGELDPESPTPDEVVATALYINTHAWNEERGKALAWQVVGLRS CCCHHHHHHHCEEEEEEECCCCCCCCCHHHHEEEEEEEEECCCCCCCCCEEEEEEEEECC DGCDVKVFYGTGLGAAVRSILGNNGVSLRKGNHRGIRTHQKVMIVDGAYGDDLDTVRAWT CCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEEECCCCCCHHHHEEEC GSQNWSDRAAKRDDLIVQINDEADAQRYVDRFLWMWDRA CCCCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA