| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715685
Identifier: 119715685
GI number: 119715685
Start: 1535864
End: 1536958
Strand: Direct
Name: 119715685
Synonym: Noca_1449
Alternate gene names: NA
Gene position: 1535864-1536958 (Clockwise)
Preceding gene: 119715684
Following gene: 119715686
Centisome position: 30.8
GC content: 71.96
Gene sequence:
>1095_bases ATGTCCAAGCACGCCGGTCCGCACGACCCGGACGAGCGCAACGGCGCCGCGGTCGCGACGATCGCGGTGGTCGGCCTGCT CGGTCTGGTCGTCTCGGTGCTGGCCATCTTCCGCCCCGGGGACGCCGGCACCACCGGCGCGACCGACGTGGCCCTGGCGA CCCAGCGGCCGAGCATCACCCGGACCACCGGATCTGTGGAGCCCACCGGGGCGCCCGAGCAGCAGGCCGTGCTCCCGGCG CCGACGATCCGGCCGCAGCAGGTCGGCAAGGTGGGTCGCGAGCTGCGCCGCAAGACCCAGCTGGTCGCCCGCCAGGCGCC GACCACCTTCCGGGTGAGCACCTTCAACGTCCTGGGTGCCTCCCACACGAACGCCGGCGGCAACAAGCGGGGCTGGGCCA GCGCCGGCACCCGGATGGGCTGGGCGGTCTCGGTGCTGCGCTCCTCCGGTGCCGACGTCGTCGGCCTCCAGGAGTTCGAG GAGTCCCAGTTCCGCACGTTCACCAACCTGACCGCCGGCAGCTGGGGCGTCTATCCCGGGACGAGCGGCGACCCCCGCGC GGTCCGCAACTCGATCGCGTGGCGCACCGACACCTGGGAGCTGGTGGCGGGCGCCACCACCCCGATCCCGTACTTCCGGG GCCAGAAGATCCCGATGCCCTACGTGCGCCTGCGCAACATCGCCTCGGGGCAGGACGTCTACTTCATCAACGTGCACAAC CCGGCCACGACCGGGCGCTGGGGGAACAACGAGCGCTGGCGCGACGCGGCCATCGCCCTCGAGATCGGGCTGATCAACCA GCTGCACACCGCGGGCTTCCCGGTGGTCCTCACCGGTGACTTCAACGAACGCGACGAGGTGTTCTGCAAGGTCACCGGAT CGGGCGCGATGCGCGCCGCGAACGGCGGCTCGGCCGGCGGTTCCTGCGTGCCGCCGCCGGACATGAACGTCGACTGGATC TTCGGCTCCTCGGTCATCGAGTTCTCCAACTTCCTGGCCACCAAGGGCGGCCTGGTGCAGCGCGCGACCGACCATCCGTT CGTCGTCGCAGACGCGCTGATCCCCCCGCTCGCGCCCGTGCTCGCCCGGCGCTGA
Upstream 100 bases:
>100_bases CGTCGCCGGCGGGGTTGAGAGGCGCTCGTTCGGGTAGAGTCAGCACAGCCAGTCAGGCGGCGAACCGGCAGCGACCGGTG TGGAAGAGGGATCGCGAGGC
Downstream 100 bases:
>100_bases CCCGGCCACCACTGGGTCGGACCGGATCGGACGGCGCGCTCCGACCTGCCCGAAAGGGCAGGTGGTGACGTGAGGGACTG GTGTGACAATGGGTGATCGT
Product: endonuclease/exonuclease/phosphatase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 364; Mature: 363
Protein sequence:
>364_residues MSKHAGPHDPDERNGAAVATIAVVGLLGLVVSVLAIFRPGDAGTTGATDVALATQRPSITRTTGSVEPTGAPEQQAVLPA PTIRPQQVGKVGRELRRKTQLVARQAPTTFRVSTFNVLGASHTNAGGNKRGWASAGTRMGWAVSVLRSSGADVVGLQEFE ESQFRTFTNLTAGSWGVYPGTSGDPRAVRNSIAWRTDTWELVAGATTPIPYFRGQKIPMPYVRLRNIASGQDVYFINVHN PATTGRWGNNERWRDAAIALEIGLINQLHTAGFPVVLTGDFNERDEVFCKVTGSGAMRAANGGSAGGSCVPPPDMNVDWI FGSSVIEFSNFLATKGGLVQRATDHPFVVADALIPPLAPVLARR
Sequences:
>Translated_364_residues MSKHAGPHDPDERNGAAVATIAVVGLLGLVVSVLAIFRPGDAGTTGATDVALATQRPSITRTTGSVEPTGAPEQQAVLPA PTIRPQQVGKVGRELRRKTQLVARQAPTTFRVSTFNVLGASHTNAGGNKRGWASAGTRMGWAVSVLRSSGADVVGLQEFE ESQFRTFTNLTAGSWGVYPGTSGDPRAVRNSIAWRTDTWELVAGATTPIPYFRGQKIPMPYVRLRNIASGQDVYFINVHN PATTGRWGNNERWRDAAIALEIGLINQLHTAGFPVVLTGDFNERDEVFCKVTGSGAMRAANGGSAGGSCVPPPDMNVDWI FGSSVIEFSNFLATKGGLVQRATDHPFVVADALIPPLAPVLARR >Mature_363_residues SKHAGPHDPDERNGAAVATIAVVGLLGLVVSVLAIFRPGDAGTTGATDVALATQRPSITRTTGSVEPTGAPEQQAVLPAP TIRPQQVGKVGRELRRKTQLVARQAPTTFRVSTFNVLGASHTNAGGNKRGWASAGTRMGWAVSVLRSSGADVVGLQEFEE SQFRTFTNLTAGSWGVYPGTSGDPRAVRNSIAWRTDTWELVAGATTPIPYFRGQKIPMPYVRLRNIASGQDVYFINVHNP ATTGRWGNNERWRDAAIALEIGLINQLHTAGFPVVLTGDFNERDEVFCKVTGSGAMRAANGGSAGGSCVPPPDMNVDWIF GSSVIEFSNFLATKGGLVQRATDHPFVVADALIPPLAPVLARR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38648; Mature: 38517
Theoretical pI: Translated: 10.25; Mature: 10.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKHAGPHDPDERNGAAVATIAVVGLLGLVVSVLAIFRPGDAGTTGATDVALATQRPSIT CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCE RTTGSVEPTGAPEQQAVLPAPTIRPQQVGKVGRELRRKTQLVARQAPTTFRVSTFNVLGA ECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECC SHTNAGGNKRGWASAGTRMGWAVSVLRSSGADVVGLQEFEESQFRTFTNLTAGSWGVYPG CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCC TSGDPRAVRNSIAWRTDTWELVAGATTPIPYFRGQKIPMPYVRLRNIASGQDVYFINVHN CCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECCC PATTGRWGNNERWRDAAIALEIGLINQLHTAGFPVVLTGDFNERDEVFCKVTGSGAMRAA CCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCEEEECCCCCCCEEEEEEECCCCEEEC NGGSAGGSCVPPPDMNVDWIFGSSVIEFSNFLATKGGLVQRATDHPFVVADALIPPLAPV CCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCEEECCCCCEEEEHHHHHHHHHH LARR HCCC >Mature Secondary Structure SKHAGPHDPDERNGAAVATIAVVGLLGLVVSVLAIFRPGDAGTTGATDVALATQRPSIT CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCE RTTGSVEPTGAPEQQAVLPAPTIRPQQVGKVGRELRRKTQLVARQAPTTFRVSTFNVLGA ECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECC SHTNAGGNKRGWASAGTRMGWAVSVLRSSGADVVGLQEFEESQFRTFTNLTAGSWGVYPG CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCC TSGDPRAVRNSIAWRTDTWELVAGATTPIPYFRGQKIPMPYVRLRNIASGQDVYFINVHN CCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECCC PATTGRWGNNERWRDAAIALEIGLINQLHTAGFPVVLTGDFNERDEVFCKVTGSGAMRAA CCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCEEEECCCCCCCEEEEEEECCCCEEEC NGGSAGGSCVPPPDMNVDWIFGSSVIEFSNFLATKGGLVQRATDHPFVVADALIPPLAPV CCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCEEECCCCCEEEEHHHHHHHHHH LARR HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA