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The map label for this gene is ycjO [C]

Identifier: 119715655

GI number: 119715655

Start: 1503151

End: 1504095

Strand: Reverse

Name: ycjO [C]

Synonym: Noca_1419

Alternate gene names: 119715655

Gene position: 1504095-1503151 (Counterclockwise)

Preceding gene: 119715656

Following gene: 119715654

Centisome position: 30.17

GC content: 66.67

Gene sequence:

>945_bases
ATGGCCATCACTGGCGAAGCCGCACCGCGGACCCGAGTCTCGGTCCGGACACGCACCCGGGCGCACCTGCGCTCGGAAAG
CCTCCTCGGAGTGCTGTTCGTGCTCCCGACGCTGGTTCTCGTCGGCGTGGTCGTCTTCTATCCCATTCTCGAGACGGCCC
TGATGTCGGTCAGCTCGGTGAACTCCCTGGCCCAGCGTGAGGGGTTCACCGGCCTGGAGAACTACCGCACCCTCACCGAC
CCGGTCTTCCAGCGCGTCCTGATGCAGACGGTCGGTTGGACCGTCGCGGTCGTCGGCGTCACCACGCTGGTCGCGCTGCC
CGTCGCCTTGGGCCTGAACCAGAAGTTCCCCGGGCGGCGGATCGCTCGCGCACTCCTGATCGTGCCGTGGGCGGCGTCGC
TCATGATCAACGCGATCATCTGGCGCTGGATCCTCGATGGGCAGTACAGCATCATCAACGGCACCCTGATGAGGCTGCAG
CTCATCGATGCGCCGATCATCTGGCTCGGCTCCGAACGGACGGCCTGGTTCGCGATCATCGCGGTGGGGATCCTGGTCTC
GATCCCCTTCACGGCGTTCTCGCTGCTCGCAGGCCTGCAGTCGGTGCCCGAGGAGGTCTACGAGGCGGCGGTGGTCGACG
GTGCCGGCTTCTGGTCGACGCTCCTGCACGTCACGCTCCCCCTGATGCGCCCCGTGCTCGTCGTCACGACCCTGCTCAAC
GTCATCTACGTCTTCAACTCGTTCCCGATCCCCTGGGTGCTCACCCAGGGGGCACCCGCCTACCACACGGACATCCTGGT
GACCTACCTCTACAAGCGCGCCTTCACCGAGGGCCAGTTCGGGCCTGCGGCCGCCATGGCGATGGTGACGTTCGTGCTGC
TCCTCGTCTTCAGTCTCGGCTTCTCCTACCTCACCCGTGAGCGCACCCGGGCGGGTGGGCGATGA

Upstream 100 bases:

>100_bases
GCCACCGAGCAGATCGACAAGCTCTGACCGAGGGGCGGGTTGCCGGCGTCCCTCGCGTCGACAACCCGCCCCACCATCGC
GCTCGACCCGAGGACTGACC

Downstream 100 bases:

>100_bases
CCCGCGACCGAGCGCTCGCGCGCTGGCTGCTCCTGAGCTTCCTGATCCTGGTGCTGGCGGTATCGACCTTCCCGTTCGCG
TTCGCGTTCTCGACCGCGCT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MAITGEAAPRTRVSVRTRTRAHLRSESLLGVLFVLPTLVLVGVVVFYPILETALMSVSSVNSLAQREGFTGLENYRTLTD
PVFQRVLMQTVGWTVAVVGVTTLVALPVALGLNQKFPGRRIARALLIVPWAASLMINAIIWRWILDGQYSIINGTLMRLQ
LIDAPIIWLGSERTAWFAIIAVGILVSIPFTAFSLLAGLQSVPEEVYEAAVVDGAGFWSTLLHVTLPLMRPVLVVTTLLN
VIYVFNSFPIPWVLTQGAPAYHTDILVTYLYKRAFTEGQFGPAAAMAMVTFVLLLVFSLGFSYLTRERTRAGGR

Sequences:

>Translated_314_residues
MAITGEAAPRTRVSVRTRTRAHLRSESLLGVLFVLPTLVLVGVVVFYPILETALMSVSSVNSLAQREGFTGLENYRTLTD
PVFQRVLMQTVGWTVAVVGVTTLVALPVALGLNQKFPGRRIARALLIVPWAASLMINAIIWRWILDGQYSIINGTLMRLQ
LIDAPIIWLGSERTAWFAIIAVGILVSIPFTAFSLLAGLQSVPEEVYEAAVVDGAGFWSTLLHVTLPLMRPVLVVTTLLN
VIYVFNSFPIPWVLTQGAPAYHTDILVTYLYKRAFTEGQFGPAAAMAMVTFVLLLVFSLGFSYLTRERTRAGGR
>Mature_313_residues
AITGEAAPRTRVSVRTRTRAHLRSESLLGVLFVLPTLVLVGVVVFYPILETALMSVSSVNSLAQREGFTGLENYRTLTDP
VFQRVLMQTVGWTVAVVGVTTLVALPVALGLNQKFPGRRIARALLIVPWAASLMINAIIWRWILDGQYSIINGTLMRLQL
IDAPIIWLGSERTAWFAIIAVGILVSIPFTAFSLLAGLQSVPEEVYEAAVVDGAGFWSTLLHVTLPLMRPVLVVTTLLNV
IYVFNSFPIPWVLTQGAPAYHTDILVTYLYKRAFTEGQFGPAAAMAMVTFVLLLVFSLGFSYLTRERTRAGGR

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=248, Percent_Identity=33.0645161290323, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI1790465, Length=258, Percent_Identity=29.4573643410853, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789861, Length=284, Percent_Identity=26.056338028169, Blast_Score=85, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34508; Mature: 34377

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAITGEAAPRTRVSVRTRTRAHLRSESLLGVLFVLPTLVLVGVVVFYPILETALMSVSSV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSLAQREGFTGLENYRTLTDPVFQRVLMQTVGWTVAVVGVTTLVALPVALGLNQKFPGRR
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
IARALLIVPWAASLMINAIIWRWILDGQYSIINGTLMRLQLIDAPIIWLGSERTAWFAII
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHH
AVGILVSIPFTAFSLLAGLQSVPEEVYEAAVVDGAGFWSTLLHVTLPLMRPVLVVTTLLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VIYVFNSFPIPWVLTQGAPAYHTDILVTYLYKRAFTEGQFGPAAAMAMVTFVLLLVFSLG
HHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
FSYLTRERTRAGGR
HHHHHHHHHCCCCC
>Mature Secondary Structure 
AITGEAAPRTRVSVRTRTRAHLRSESLLGVLFVLPTLVLVGVVVFYPILETALMSVSSV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSLAQREGFTGLENYRTLTDPVFQRVLMQTVGWTVAVVGVTTLVALPVALGLNQKFPGRR
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
IARALLIVPWAASLMINAIIWRWILDGQYSIINGTLMRLQLIDAPIIWLGSERTAWFAII
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHH
AVGILVSIPFTAFSLLAGLQSVPEEVYEAAVVDGAGFWSTLLHVTLPLMRPVLVVTTLLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VIYVFNSFPIPWVLTQGAPAYHTDILVTYLYKRAFTEGQFGPAAAMAMVTFVLLLVFSLG
HHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
FSYLTRERTRAGGR
HHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA