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The map label for this gene is 119715473

Identifier: 119715473

GI number: 119715473

Start: 1313226

End: 1314140

Strand: Direct

Name: 119715473

Synonym: Noca_1237

Alternate gene names: NA

Gene position: 1313226-1314140 (Clockwise)

Preceding gene: 119715472

Following gene: 119715474

Centisome position: 26.34

GC content: 73.22

Gene sequence:

>915_bases
ATGGCGCAGCCCGAGAAGGAGGAGGTCCGGGTCCAGGTGGACGGCCGGACCCTCACCATCAGCAACCTGTACAAGGTGCT
CTACCCCCGCACCGGCACCACGAAGGGGGAGGTCCTCAACTACTACGCCCAGGTCGCGCCGACGCTGCTGCCGCACCTCG
CGGGGCGCTGCGTCACCCGGATCCGATGGCCGCACGGCGTGCACGAGGGCAGCTTCTTCGAGAAGAACGCCCCAGCCGGC
ACCCCGTCGTGGGTGCGGACCGCCGAGGTCCCCACGACCGGCAGCCGCGCCCAGTCCAGCTCCGATACCTTGGTCTTCCC
GATCATCGAGGACCTGGCGACCCTCACCTGGCTGGTCAACCTCGCGGCCCTCGAGCTGCACGTGCACCAGTGGACCGTCG
ACCGCAGCGGCCGCCCGCGGGGCGCGGACCGGGTCGTCGTCGACCTCGACCCGGGGGAGCCGGCCGGCCTGCACGAGTGC
TGCCGGGTCGCCCTGATGGTGCGCGACCGGCTCGCCGAGCGCGGGCTGGCGGCCAAGCCGGTCACCAGCGGCAGCAAGGG
CCTGCACCTGTACGCCGACCTGCCGGAGCGGGTGCCGTCCGAGGACTCCTCGGCGCTGGCCAAGGCGGTCGCCGAGGAGC
TCCAGGGGGAGCACCCGGCGCTGGTGACCGCGACCATGACCAAGGCCCGGCGCGCGGGGAAGGTGTTCCTGGACTGGTCG
CAGAACGCCGGCTCGAAGACCACCGTCTCGCCGTACTCCCTGCGGGGGCGAGAGCTGCCCACGGTCGCGACGCCGCTCGC
CTGGGCCGAGGTCGAGGCGGGCGCCCAGGACCCGATGGCGCTGCGCCAGTTCCGCTTCGACGAGGTGCTCGAGCGCGTCC
AGGAGCACGGCGACCTGTTCGCCGGCCCCCGCTGA

Upstream 100 bases:

>100_bases
GCGCGACGGCCGGCTGCGTGAGCGCACCGCGCTGGTTCATCAAGTCGCTGATGGACCGCCTCGACCCGGACCGGAAGCCC
GTGATCGCGATCGGCCGCTG

Downstream 100 bases:

>100_bases
GTGCTGCCCCGGATCGCATCTGCGCAGGTCAGAGGCGGTGCGGGACGGTGGCGCCTTCTGTTACCGAACGGTGGATCTTC
CGTGGAGATCGTGTTCATCG

Product: ATP dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MAQPEKEEVRVQVDGRTLTISNLYKVLYPRTGTTKGEVLNYYAQVAPTLLPHLAGRCVTRIRWPHGVHEGSFFEKNAPAG
TPSWVRTAEVPTTGSRAQSSSDTLVFPIIEDLATLTWLVNLAALELHVHQWTVDRSGRPRGADRVVVDLDPGEPAGLHEC
CRVALMVRDRLAERGLAAKPVTSGSKGLHLYADLPERVPSEDSSALAKAVAEELQGEHPALVTATMTKARRAGKVFLDWS
QNAGSKTTVSPYSLRGRELPTVATPLAWAEVEAGAQDPMALRQFRFDEVLERVQEHGDLFAGPR

Sequences:

>Translated_304_residues
MAQPEKEEVRVQVDGRTLTISNLYKVLYPRTGTTKGEVLNYYAQVAPTLLPHLAGRCVTRIRWPHGVHEGSFFEKNAPAG
TPSWVRTAEVPTTGSRAQSSSDTLVFPIIEDLATLTWLVNLAALELHVHQWTVDRSGRPRGADRVVVDLDPGEPAGLHEC
CRVALMVRDRLAERGLAAKPVTSGSKGLHLYADLPERVPSEDSSALAKAVAEELQGEHPALVTATMTKARRAGKVFLDWS
QNAGSKTTVSPYSLRGRELPTVATPLAWAEVEAGAQDPMALRQFRFDEVLERVQEHGDLFAGPR
>Mature_303_residues
AQPEKEEVRVQVDGRTLTISNLYKVLYPRTGTTKGEVLNYYAQVAPTLLPHLAGRCVTRIRWPHGVHEGSFFEKNAPAGT
PSWVRTAEVPTTGSRAQSSSDTLVFPIIEDLATLTWLVNLAALELHVHQWTVDRSGRPRGADRVVVDLDPGEPAGLHECC
RVALMVRDRLAERGLAAKPVTSGSKGLHLYADLPERVPSEDSSALAKAVAEELQGEHPALVTATMTKARRAGKVFLDWSQ
NAGSKTTVSPYSLRGRELPTVATPLAWAEVEAGAQDPMALRQFRFDEVLERVQEHGDLFAGPR

Specific function: Unknown

COG id: COG3285

COG function: function code L; Predicted eukaryotic-type DNA primase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 33298; Mature: 33167

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQPEKEEVRVQVDGRTLTISNLYKVLYPRTGTTKGEVLNYYAQVAPTLLPHLAGRCVTR
CCCCCCCCEEEEECCCEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IRWPHGVHEGSFFEKNAPAGTPSWVRTAEVPTTGSRAQSSSDTLVFPIIEDLATLTWLVN
HCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHH
LAALELHVHQWTVDRSGRPRGADRVVVDLDPGEPAGLHECCRVALMVRDRLAERGLAAKP
HHHHEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
VTSGSKGLHLYADLPERVPSEDSSALAKAVAEELQGEHPALVTATMTKARRAGKVFLDWS
CCCCCCCEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCEEEEEEC
QNAGSKTTVSPYSLRGRELPTVATPLAWAEVEAGAQDPMALRQFRFDEVLERVQEHGDLF
CCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
AGPR
CCCC
>Mature Secondary Structure 
AQPEKEEVRVQVDGRTLTISNLYKVLYPRTGTTKGEVLNYYAQVAPTLLPHLAGRCVTR
CCCCCCCEEEEECCCEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IRWPHGVHEGSFFEKNAPAGTPSWVRTAEVPTTGSRAQSSSDTLVFPIIEDLATLTWLVN
HCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHH
LAALELHVHQWTVDRSGRPRGADRVVVDLDPGEPAGLHECCRVALMVRDRLAERGLAAKP
HHHHEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
VTSGSKGLHLYADLPERVPSEDSSALAKAVAEELQGEHPALVTATMTKARRAGKVFLDWS
CCCCCCCEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCEEEEEEC
QNAGSKTTVSPYSLRGRELPTVATPLAWAEVEAGAQDPMALRQFRFDEVLERVQEHGDLF
CCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
AGPR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]