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The map label for this gene is 119715471

Identifier: 119715471

GI number: 119715471

Start: 1311569

End: 1312504

Strand: Direct

Name: 119715471

Synonym: Noca_1235

Alternate gene names: NA

Gene position: 1311569-1312504 (Clockwise)

Preceding gene: 119715468

Following gene: 119715472

Centisome position: 26.31

GC content: 73.5

Gene sequence:

>936_bases
ATGGAGTCCATGCGCCCGATGCTCGCCACCCATGGTCGGCAGGTCCCGACGGGGGAGGCCTGGGCGCACGAGGTGAAGTG
GGACGGGGTCCGCGCGCTGACCGAGGTGCGCGACGGCGCGCTGCGGATGACCAGCCGCAACGAGAACGCGATCACGATCG
CCTGGCCCGAGCTCGCGACCAGCCCGCTGGGTGATCGCGACCTGCTCGTGGATGGCGAGATCATCGCGCTCAACGAGCGC
GGGCTGCCGGACTTCCGCACCCTCCAGGACCGGATGCACGTGCGCAAGGCGGCCACGGCGGCCCGGCTCTCGCGGGAGGT
GCCCGCGACCTACATGGTCTTCGACGTGCTCCGGATCGACGGTCGCGACCTGACCGGCGAGCCGCTCGACGTACGCCGGG
AGCTGCTCGCCGGCCTCGGCCTGGACGGCACCTGGCAGGTGCCGGGCTCCTACGACGACGGGCCGATGCTGTTCGAGGCC
ACCCTCCAGCAGGGCTTCGAGGGCATCGTCAGCAAGCGCCGCAGCTCCCGCTACGCCTTCGGCGAGCGTTCGCCGCACTG
GCTGAAGTTCGCGCACCGGCACCGGGTCTCCTACGTGGTGGGCGGGTGGCGCCCCCAGGAGGGCACCGCCGACCGGCTCG
CCTCGCTGCTCGTGGGGGAGCCGACCGCCGACGGGCTGCTCTACCGTGGCCGGGTGGGCAGCGGGATCGGGCCGAAGCAG
GGGCGTGCGCTGGCCGAGCTGGTGGCCCGGCTCGGCCGCCCCGCCAGCCCGTTCGCCGACGAGGTGCCGCGCGCCGACGC
GCAGGGCACCCGCTGGCTGGAGCCGGTCCTGGTCGTGGACATCGACACCCACGGTCGTGGGTACCAGCGCCTGCGCCAGC
CCTCGTTCCAGGGGGTTCGCTCCGACCTCACCCCGGAGGACCTGTGCTCCACCTGA

Upstream 100 bases:

>100_bases
TCCAGATCGCACGCATCCGCATCCTCCTCCAAGGGGTGGTGCCCAGTGTGACTCATGTGAACACCCGCAGTCATCGGTGC
GCAGTCGACGGTCCGGCAGG

Downstream 100 bases:

>100_bases
TGGCCCGTTCACTCCTGATGTCCGTCGGCACGCCCTTCGTTCTCGCGGTCGCGCTGGCCGCGACCGTGCTCGTCGCGCCG
CCTCCGGCGCAGGCGGCGCG

Product: ATP dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MESMRPMLATHGRQVPTGEAWAHEVKWDGVRALTEVRDGALRMTSRNENAITIAWPELATSPLGDRDLLVDGEIIALNER
GLPDFRTLQDRMHVRKAATAARLSREVPATYMVFDVLRIDGRDLTGEPLDVRRELLAGLGLDGTWQVPGSYDDGPMLFEA
TLQQGFEGIVSKRRSSRYAFGERSPHWLKFAHRHRVSYVVGGWRPQEGTADRLASLLVGEPTADGLLYRGRVGSGIGPKQ
GRALAELVARLGRPASPFADEVPRADAQGTRWLEPVLVVDIDTHGRGYQRLRQPSFQGVRSDLTPEDLCST

Sequences:

>Translated_311_residues
MESMRPMLATHGRQVPTGEAWAHEVKWDGVRALTEVRDGALRMTSRNENAITIAWPELATSPLGDRDLLVDGEIIALNER
GLPDFRTLQDRMHVRKAATAARLSREVPATYMVFDVLRIDGRDLTGEPLDVRRELLAGLGLDGTWQVPGSYDDGPMLFEA
TLQQGFEGIVSKRRSSRYAFGERSPHWLKFAHRHRVSYVVGGWRPQEGTADRLASLLVGEPTADGLLYRGRVGSGIGPKQ
GRALAELVARLGRPASPFADEVPRADAQGTRWLEPVLVVDIDTHGRGYQRLRQPSFQGVRSDLTPEDLCST
>Mature_311_residues
MESMRPMLATHGRQVPTGEAWAHEVKWDGVRALTEVRDGALRMTSRNENAITIAWPELATSPLGDRDLLVDGEIIALNER
GLPDFRTLQDRMHVRKAATAARLSREVPATYMVFDVLRIDGRDLTGEPLDVRRELLAGLGLDGTWQVPGSYDDGPMLFEA
TLQQGFEGIVSKRRSSRYAFGERSPHWLKFAHRHRVSYVVGGWRPQEGTADRLASLLVGEPTADGLLYRGRVGSGIGPKQ
GRALAELVARLGRPASPFADEVPRADAQGTRWLEPVLVVDIDTHGRGYQRLRQPSFQGVRSDLTPEDLCST

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 34497; Mature: 34497

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS00697 DNA_LIGASE_A1 ; PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESMRPMLATHGRQVPTGEAWAHEVKWDGVRALTEVRDGALRMTSRNENAITIAWPELAT
CCCCCCHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEECCCCCEEEEECHHHHC
SPLGDRDLLVDGEIIALNERGLPDFRTLQDRMHVRKAATAARLSREVPATYMVFDVLRID
CCCCCCCEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
GRDLTGEPLDVRRELLAGLGLDGTWQVPGSYDDGPMLFEATLQQGFEGIVSKRRSSRYAF
CCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
GERSPHWLKFAHRHRVSYVVGGWRPQEGTADRLASLLVGEPTADGLLYRGRVGSGIGPKQ
CCCCCHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCC
GRALAELVARLGRPASPFADEVPRADAQGTRWLEPVLVVDIDTHGRGYQRLRQPSFQGVR
CHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCHHHHHH
SDLTPEDLCST
CCCCHHHHCCC
>Mature Secondary Structure
MESMRPMLATHGRQVPTGEAWAHEVKWDGVRALTEVRDGALRMTSRNENAITIAWPELAT
CCCCCCHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEECCCCCEEEEECHHHHC
SPLGDRDLLVDGEIIALNERGLPDFRTLQDRMHVRKAATAARLSREVPATYMVFDVLRID
CCCCCCCEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
GRDLTGEPLDVRRELLAGLGLDGTWQVPGSYDDGPMLFEATLQQGFEGIVSKRRSSRYAF
CCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
GERSPHWLKFAHRHRVSYVVGGWRPQEGTADRLASLLVGEPTADGLLYRGRVGSGIGPKQ
CCCCCHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCC
GRALAELVARLGRPASPFADEVPRADAQGTRWLEPVLVVDIDTHGRGYQRLRQPSFQGVR
CHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCHHHHHH
SDLTPEDLCST
CCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]