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The map label for this gene is 119715470

Identifier: 119715470

GI number: 119715470

Start: 1310489

End: 1311484

Strand: Reverse

Name: 119715470

Synonym: Noca_1234

Alternate gene names: NA

Gene position: 1311484-1310489 (Counterclockwise)

Preceding gene: 119715480

Following gene: 119715469

Centisome position: 26.3

GC content: 69.18

Gene sequence:

>996_bases
ATGCGTGCGATCTGGAAGGGCGCGGTGTCGTTCGGGCTCGTCAGCGTGCCCGTGAAGCTGTACGCCGCGACGGAGTCCCA
CGACGTCTCGTTCCGGCAGGTGCATGCCAAGGACGGCGGGCGGATCAAGTACCAGCGGGTGTGCTCGCTGGACGGCGAGG
AGGTCGCCTACGCCGACATCGCCAAGGGCTACGAGACCGAGGACGGCGAGATGGTGGTCCTCACCGACGACGACATGGCC
GAGCTGCCGTCGACGTCGTCGCGCGAGATCGCGGTCGAGAAGTTCGTGCCGTCCGAGCAGATCGACCCGATGCTGTTCGA
GAAGTCCTACTACCTCGAGCCGGAGAAGTCCGGCGCCAAGCCCTACGCGCTGCTGCGCCAGGCGCTGCTCGACGCCGACC
GGATGGCGGTCGTCACGGTCGCGCTCCGCCAGCGCACCACGGTCGGCGTGCTGCGGGTGAAGGACGCCGACAACGGACAG
GTGATCGTGCTGCAGACCATGATGTGGCCCGACGAGATCCGCACCCCGGACTTCGTGGTGGACGCCGGCGAGGTCAAGCC
GGCCGAGGTCAAGATGGCGAACATGCTGGTCGAGACGCTGGCCGGGGACTTCGACCCGGCGGAGTTCGAGGACGACTATG
CCGAGGCGGTCGAGGCGCTGGTGAAGGCCAAGGTCGAGGGCGGCGAGGTCAAGCGCACACCGACGTCGACCAAGTCCTCC
GGCGAGGTCGTCGACCTGCTCGCCGCGCTGCAGCGCTCGGTGGACGCCGCGAAGTCCGCCCGCGGCGAGGAGACCGCGGC
CGGTCCCCGGGACGACTCCGAGGAGGAGGCCGAGGACCAGACCGAGCCCACGAAGAAGACCGCCGCCAAGAAGTCGGCGG
CAAAGAGGGCACCCGCGAAGAAGACCGCCGCCAAGAAGTCGGCGGCCACGAAGGCCGCCACGAAGGCACCCGCCAAGAAG
GCCGCCAAGAAGGCACCGGCCCGCAAGGCCAGCTGA

Upstream 100 bases:

>100_bases
GGCGCATGGACTCCATCCTGCCGGACCGTCGACTGCGCACCGATGACTGCGGGTGTTCACATGAGTCACACTGGGCACCA
CCCCTTGGAGGAGGATGCGG

Downstream 100 bases:

>100_bases
CCTGGAGCCGGCTGTCCGCAGGGGACACCGATGCGTTCCATCACGTTCGTCGAGCGGGCCGATGAGAACGCCGGCCCGGC
CCGGTCGGACTCGTGAGCAC

Product: DNA end-binding protein Ku

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MRAIWKGAVSFGLVSVPVKLYAATESHDVSFRQVHAKDGGRIKYQRVCSLDGEEVAYADIAKGYETEDGEMVVLTDDDMA
ELPSTSSREIAVEKFVPSEQIDPMLFEKSYYLEPEKSGAKPYALLRQALLDADRMAVVTVALRQRTTVGVLRVKDADNGQ
VIVLQTMMWPDEIRTPDFVVDAGEVKPAEVKMANMLVETLAGDFDPAEFEDDYAEAVEALVKAKVEGGEVKRTPTSTKSS
GEVVDLLAALQRSVDAAKSARGEETAAGPRDDSEEEAEDQTEPTKKTAAKKSAAKRAPAKKTAAKKSAATKAATKAPAKK
AAKKAPARKAS

Sequences:

>Translated_331_residues
MRAIWKGAVSFGLVSVPVKLYAATESHDVSFRQVHAKDGGRIKYQRVCSLDGEEVAYADIAKGYETEDGEMVVLTDDDMA
ELPSTSSREIAVEKFVPSEQIDPMLFEKSYYLEPEKSGAKPYALLRQALLDADRMAVVTVALRQRTTVGVLRVKDADNGQ
VIVLQTMMWPDEIRTPDFVVDAGEVKPAEVKMANMLVETLAGDFDPAEFEDDYAEAVEALVKAKVEGGEVKRTPTSTKSS
GEVVDLLAALQRSVDAAKSARGEETAAGPRDDSEEEAEDQTEPTKKTAAKKSAAKRAPAKKTAAKKSAATKAATKAPAKK
AAKKAPARKAS
>Mature_331_residues
MRAIWKGAVSFGLVSVPVKLYAATESHDVSFRQVHAKDGGRIKYQRVCSLDGEEVAYADIAKGYETEDGEMVVLTDDDMA
ELPSTSSREIAVEKFVPSEQIDPMLFEKSYYLEPEKSGAKPYALLRQALLDADRMAVVTVALRQRTTVGVLRVKDADNGQ
VIVLQTMMWPDEIRTPDFVVDAGEVKPAEVKMANMLVETLAGDFDPAEFEDDYAEAVEALVKAKVEGGEVKRTPTSTKSS
GEVVDLLAALQRSVDAAKSARGEETAAGPRDDSEEEAEDQTEPTKKTAAKKSAAKRAPAKKTAAKKSAATKAATKAPAKK
AAKKAPARKAS

Specific function: Could be involved in DNA repair [H]

COG id: COG1273

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ku domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006164
- InterPro:   IPR009187
- InterPro:   IPR016194 [H]

Pfam domain/function: PF02735 Ku [H]

EC number: NA

Molecular weight: Translated: 35713; Mature: 35713

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAIWKGAVSFGLVSVPVKLYAATESHDVSFRQVHAKDGGRIKYQRVCSLDGEEVAYADI
CCCHHHHHHHHHHHEECEEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHH
AKGYETEDGEMVVLTDDDMAELPSTSSREIAVEKFVPSEQIDPMLFEKSYYLEPEKSGAK
HCCCCCCCCCEEEEECCCHHHCCCCCCCCEEHHHCCCCHHCCCHHCCCCEECCCCCCCCC
PYALLRQALLDADRMAVVTVALRQRTTVGVLRVKDADNGQVIVLQTMMWPDEIRTPDFVV
HHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEECCCHHCCCCCEEE
DAGEVKPAEVKMANMLVETLAGDFDPAEFEDDYAEAVEALVKAKVEGGEVKRTPTSTKSS
ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCC
GEVVDLLAALQRSVDAAKSARGEETAAGPRDDSEEEAEDQTEPTKKTAAKKSAAKRAPAK
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCHH
KTAAKKSAATKAATKAPAKKAAKKAPARKAS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRAIWKGAVSFGLVSVPVKLYAATESHDVSFRQVHAKDGGRIKYQRVCSLDGEEVAYADI
CCCHHHHHHHHHHHEECEEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHH
AKGYETEDGEMVVLTDDDMAELPSTSSREIAVEKFVPSEQIDPMLFEKSYYLEPEKSGAK
HCCCCCCCCCEEEEECCCHHHCCCCCCCCEEHHHCCCCHHCCCHHCCCCEECCCCCCCCC
PYALLRQALLDADRMAVVTVALRQRTTVGVLRVKDADNGQVIVLQTMMWPDEIRTPDFVV
HHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEECCCHHCCCCCEEE
DAGEVKPAEVKMANMLVETLAGDFDPAEFEDDYAEAVEALVKAKVEGGEVKRTPTSTKSS
ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCC
GEVVDLLAALQRSVDAAKSARGEETAAGPRDDSEEEAEDQTEPTKKTAAKKSAAKRAPAK
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCHH
KTAAKKSAATKAATKAPAKKAAKKAPARKAS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA