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The map label for this gene is dapE [H]

Identifier: 119715436

GI number: 119715436

Start: 1275728

End: 1276792

Strand: Direct

Name: dapE [H]

Synonym: Noca_1200

Alternate gene names: 119715436

Gene position: 1275728-1276792 (Clockwise)

Preceding gene: 119715434

Following gene: 119715437

Centisome position: 25.59

GC content: 73.52

Gene sequence:

>1065_bases
ATGCACCGGATCGACCTCACGACCGACGTCGTCACGCTGACCGAGCGGCTGGTCGACATCGAGTCGGTCAGCCGCAACGA
GCAGGCGATCGCGGACGCGGTCGAGACGGCGCTCGCGGCGTACCCCCACCTGACCGTCACCCGGCACGGCAACACCGTCG
TCGCCCGCACCGACCTCGGCCGGCCCGAGCGGGTCGTGATCGCCGGCCACCTCGACACCGTGCCGGTCAACGACAACCTC
CCCGCCCGCCGCGAGGGCGGGCTCCTGCACGGCCTCGGGACCTGCGACATGAAGGGCGGCGACGCGGTGATCCTCCGGCT
CGCCGCCACCGTCACCGAGCCCACCCGCGACGTCACCTACCTGCTCTACGACGCCGAGGAGGTCGAGGCCGAGCACAACG
GCTTGCGGCTGCTCTCGCTGAGCCACCCCGAGCTGCTGGCCGCCGACTTCGCGATCCTGATGGAGCCGTCCAACGCCGGC
GTCGAGGCCGGCTGCCAGGGCACGCTGCGCGTCGACGTGCGCACCACCGGCGAGCGCGCCCACTCCGCGCGCAGCTGGCG
CGGCGTCAACGCGATCCACCGGGCCGGCGAGGTGCTCCGCCGCCTCGAGGGGTACGCCGCCAGGCGGCCGGTCATCGACG
GGCTGGAGTACCACGAGGGCCTGAACGCGGTGGGCATCCGCGGCGGCGTGGCCGGCAACGTGGTCCCCGACGAGTGCGTC
GTCGCGGTCAACTACCGGTTCGCCCCCGACCGCTCGGAGGCCGAGGCCGAGGCGTTCGTCCGCGAGTTCTTCGCCGGCTT
CGACGTCACCGTCACCGACTCGGCGCCCGGCGCGCTGCCCGGGCTCGACCGGCCGGCCGCGAAGGCGTTCGTCGACGCCG
TCGGCGGCGAGGTCAACCCGAAGTTCGGGTGGACCGACGTGGCCAGGTTCACCGGGCTCGGCATCCCGGCGGTGAACTAC
GGGCCGGGCGACCCGGTGCTCGCGCACAAGCAGGAGGAGCACGTGCCGATCGAGCAGATCGAGCGTTGCGAGACCCGGCT
CCGGGCCTGGCTGGAAGGACGCTGA

Upstream 100 bases:

>100_bases
CCGCGGTCGGAGGTGAACAGGACGAGTCCGTTACGCATGCGGCCGATACTAGAACGAGTTCTAGTTCGGTCGATAGTCCC
GCGGCTGGTTGGATGAGGGC

Downstream 100 bases:

>100_bases
GATGGTGCGCTCGAAGTCCAAGGGCCCGATCCTGCAGCGCCGCGCCCAGGTGGACGCGGTCACCACCGACCAGCGGCTGC
TCGACAGTCGTGGGTCGGCC

Product: succinyl-diaminopimelate desuccinylase

Products: NA

Alternate protein names: SDAP desuccinylase [H]

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MHRIDLTTDVVTLTERLVDIESVSRNEQAIADAVETALAAYPHLTVTRHGNTVVARTDLGRPERVVIAGHLDTVPVNDNL
PARREGGLLHGLGTCDMKGGDAVILRLAATVTEPTRDVTYLLYDAEEVEAEHNGLRLLSLSHPELLAADFAILMEPSNAG
VEAGCQGTLRVDVRTTGERAHSARSWRGVNAIHRAGEVLRRLEGYAARRPVIDGLEYHEGLNAVGIRGGVAGNVVPDECV
VAVNYRFAPDRSEAEAEAFVREFFAGFDVTVTDSAPGALPGLDRPAAKAFVDAVGGEVNPKFGWTDVARFTGLGIPAVNY
GPGDPVLAHKQEEHVPIEQIERCETRLRAWLEGR

Sequences:

>Translated_354_residues
MHRIDLTTDVVTLTERLVDIESVSRNEQAIADAVETALAAYPHLTVTRHGNTVVARTDLGRPERVVIAGHLDTVPVNDNL
PARREGGLLHGLGTCDMKGGDAVILRLAATVTEPTRDVTYLLYDAEEVEAEHNGLRLLSLSHPELLAADFAILMEPSNAG
VEAGCQGTLRVDVRTTGERAHSARSWRGVNAIHRAGEVLRRLEGYAARRPVIDGLEYHEGLNAVGIRGGVAGNVVPDECV
VAVNYRFAPDRSEAEAEAFVREFFAGFDVTVTDSAPGALPGLDRPAAKAFVDAVGGEVNPKFGWTDVARFTGLGIPAVNY
GPGDPVLAHKQEEHVPIEQIERCETRLRAWLEGR
>Mature_354_residues
MHRIDLTTDVVTLTERLVDIESVSRNEQAIADAVETALAAYPHLTVTRHGNTVVARTDLGRPERVVIAGHLDTVPVNDNL
PARREGGLLHGLGTCDMKGGDAVILRLAATVTEPTRDVTYLLYDAEEVEAEHNGLRLLSLSHPELLAADFAILMEPSNAG
VEAGCQGTLRVDVRTTGERAHSARSWRGVNAIHRAGEVLRRLEGYAARRPVIDGLEYHEGLNAVGIRGGVAGNVVPDECV
VAVNYRFAPDRSEAEAEAFVREFFAGFDVTVTDSAPGALPGLDRPAAKAFVDAVGGEVNPKFGWTDVARFTGLGIPAVNY
GPGDPVLAHKQEEHVPIEQIERCETRLRAWLEGR

Specific function: Displays A Broad Specificity And Can Also Deacylate Substrates Such As Acetylarginine, Acetylhistidine Or Acetylglutamate Semialdehyde. [C]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

Organism=Escherichia coli, GI1790395, Length=294, Percent_Identity=28.2312925170068, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788816, Length=362, Percent_Identity=25.1381215469613, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001261
- InterPro:   IPR002933
- InterPro:   IPR011650
- InterPro:   IPR010174 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.18 [H]

Molecular weight: Translated: 38234; Mature: 38234

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRIDLTTDVVTLTERLVDIESVSRNEQAIADAVETALAAYPHLTVTRHGNTVVARTDLG
CCEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCC
RPERVVIAGHLDTVPVNDNLPARREGGLLHGLGTCDMKGGDAVILRLAATVTEPTRDVTY
CCCEEEEEECCEEECCCCCCCCHHCCCEEEECCCCCCCCCCEEEEEEEHHHCCCCCCEEE
LLYDAEEVEAEHNGLRLLSLSHPELLAADFAILMEPSNAGVEAGCQGTLRVDVRTTGERA
EEEEHHHHHHCCCCEEEEEECCCHHHHHCEEEEECCCCCCCCCCCCEEEEEEEEECCHHH
HSARSWRGVNAIHRAGEVLRRLEGYAARRPVIDGLEYHEGLNAVGIRGGVAGNVVPDECV
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCEE
VAVNYRFAPDRSEAEAEAFVREFFAGFDVTVTDSAPGALPGLDRPAAKAFVDAVGGEVNP
EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCC
KFGWTDVARFTGLGIPAVNYGPGDPVLAHKQEEHVPIEQIERCETRLRAWLEGR
CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHRIDLTTDVVTLTERLVDIESVSRNEQAIADAVETALAAYPHLTVTRHGNTVVARTDLG
CCEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCC
RPERVVIAGHLDTVPVNDNLPARREGGLLHGLGTCDMKGGDAVILRLAATVTEPTRDVTY
CCCEEEEEECCEEECCCCCCCCHHCCCEEEECCCCCCCCCCEEEEEEEHHHCCCCCCEEE
LLYDAEEVEAEHNGLRLLSLSHPELLAADFAILMEPSNAGVEAGCQGTLRVDVRTTGERA
EEEEHHHHHHCCCCEEEEEECCCHHHHHCEEEEECCCCCCCCCCCCEEEEEEEEECCHHH
HSARSWRGVNAIHRAGEVLRRLEGYAARRPVIDGLEYHEGLNAVGIRGGVAGNVVPDECV
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCEE
VAVNYRFAPDRSEAEAEAFVREFFAGFDVTVTDSAPGALPGLDRPAAKAFVDAVGGEVNP
EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCC
KFGWTDVARFTGLGIPAVNYGPGDPVLAHKQEEHVPIEQIERCETRLRAWLEGR
CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7881553; 12948626; 7592354 [H]