Click here to switch to the map view.

The map label for this gene is ntaR [H]

Identifier: 119715410

GI number: 119715410

Start: 1247423

End: 1248148

Strand: Direct

Name: ntaR [H]

Synonym: Noca_1174

Alternate gene names: 119715410

Gene position: 1247423-1248148 (Clockwise)

Preceding gene: 119715409

Following gene: 119715415

Centisome position: 25.02

GC content: 70.39

Gene sequence:

>726_bases
ATGTCCAGCTCCGACCCGCTGACCCGCAGCGTGCTGGCAGATCAGGTCAAGGAGTGGCTGCTCGAGGCGATCCTGGGCGG
CGCCTACCCCCCGGACTCGCGGATCGTGGAGACCGCGGTGGCCAAGGAGCTCGGCACCAGCCAGGCCCCCGTGCGCGAGG
CATTGCGCGGTCTCGAGGCACTGGGGATCGTCGAGATCGCCCCGTTCCGCGGGGCCCGCGTACGCCGGCTCGAGGCAGCC
GAGCTGCTCGAGGCCTACGTCGTCCGATGCACGATCGAGGTGCTGGGCGCCCGCCTGGCAATGGCTCGGCTGACTGATGA
GGACATCGCCGGGCTGCTGGAGATCGGTGAACAGATGCAGAGCGCCGCCGACGCGTCCGACGGCCGGGCTCTCGCCGTGG
TGGACGCCAGCCTGCACGGCCGCATCATGGAGCTGGCGGGCAACCGCACGCTGCTCCGCGTGTGGCGGTCCTTGGAGCCG
ATATCTCGTACCTACATCACCCTCGCCGGCCCCGGCTCCGACCCGCAGTGGACCGCAGGCCTGCACACCCCGATCCTCGA
CGCGATCCGCCTTCGCGACACCGATGGCGTCGTCCACGCGATCGAGAGCCACTTCGATGAGATCCGTGACTGGCTGGCGG
ACCACCTGGCGGAGGTCGTCGAGCAGCAGGCGGCCGGGACCTCGGGACGCACGGACACCATGAGTGCCGGTCGAGGCCAC
GACTGA

Upstream 100 bases:

>100_bases
GCGCGTCCCGACAGAGCGATAGGAAGGGGTGGGTTGCGGGAGCATGGGGGTGGATCCCCGGTGACCGCTCTGTCACGTCG
AAGACCTTGGAGGGTGCCCC

Downstream 100 bases:

>100_bases
GCGCGGTGACCTCACCGGATCCAGGTGTCCCGAGGATCTACGTCGTGGGATCGGGCAACAGCACGTCGCGCACCACGCTC
TCGAGCTCTGCGCATGCGAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSSSDPLTRSVLADQVKEWLLEAILGGAYPPDSRIVETAVAKELGTSQAPVREALRGLEALGIVEIAPFRGARVRRLEAA
ELLEAYVVRCTIEVLGARLAMARLTDEDIAGLLEIGEQMQSAADASDGRALAVVDASLHGRIMELAGNRTLLRVWRSLEP
ISRTYITLAGPGSDPQWTAGLHTPILDAIRLRDTDGVVHAIESHFDEIRDWLADHLAEVVEQQAAGTSGRTDTMSAGRGH
D

Sequences:

>Translated_241_residues
MSSSDPLTRSVLADQVKEWLLEAILGGAYPPDSRIVETAVAKELGTSQAPVREALRGLEALGIVEIAPFRGARVRRLEAA
ELLEAYVVRCTIEVLGARLAMARLTDEDIAGLLEIGEQMQSAADASDGRALAVVDASLHGRIMELAGNRTLLRVWRSLEP
ISRTYITLAGPGSDPQWTAGLHTPILDAIRLRDTDGVVHAIESHFDEIRDWLADHLAEVVEQQAAGTSGRTDTMSAGRGH
D
>Mature_240_residues
SSSDPLTRSVLADQVKEWLLEAILGGAYPPDSRIVETAVAKELGTSQAPVREALRGLEALGIVEIAPFRGARVRRLEAAE
LLEAYVVRCTIEVLGARLAMARLTDEDIAGLLEIGEQMQSAADASDGRALAVVDASLHGRIMELAGNRTLLRVWRSLEPI
SRTYITLAGPGSDPQWTAGLHTPILDAIRLRDTDGVVHAIESHFDEIRDWLADHLAEVVEQQAAGTSGRTDTMSAGRGHD

Specific function: Probable regulator for the expression of the NTA monooxygenase subunits [H]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081914, Length=210, Percent_Identity=25.7142857142857, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787821, Length=199, Percent_Identity=25.1256281407035, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26005; Mature: 25874

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSDPLTRSVLADQVKEWLLEAILGGAYPPDSRIVETAVAKELGTSQAPVREALRGLEA
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LGIVEIAPFRGARVRRLEAAELLEAYVVRCTIEVLGARLAMARLTDEDIAGLLEIGEQMQ
HCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
SAADASDGRALAVVDASLHGRIMELAGNRTLLRVWRSLEPISRTYITLAGPGSDPQWTAG
HHCCCCCCCEEEEEECHHHHHHHHHHCCHHHHHHHHHHCHHHHEEEEEECCCCCCCCCCC
LHTPILDAIRLRDTDGVVHAIESHFDEIRDWLADHLAEVVEQQAAGTSGRTDTMSAGRGH
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
D
C
>Mature Secondary Structure 
SSSDPLTRSVLADQVKEWLLEAILGGAYPPDSRIVETAVAKELGTSQAPVREALRGLEA
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LGIVEIAPFRGARVRRLEAAELLEAYVVRCTIEVLGARLAMARLTDEDIAGLLEIGEQMQ
HCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
SAADASDGRALAVVDASLHGRIMELAGNRTLLRVWRSLEPISRTYITLAGPGSDPQWTAG
HHCCCCCCCEEEEEECHHHHHHHHHHCCHHHHHHHHHHCHHHHEEEEEECCCCCCCCCCC
LHTPILDAIRLRDTDGVVHAIESHFDEIRDWLADHLAEVVEQQAAGTSGRTDTMSAGRGH
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
D
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA