Click here to switch to the map view.

The map label for this gene is fadE25 [H]

Identifier: 119715050

GI number: 119715050

Start: 846460

End: 847596

Strand: Direct

Name: fadE25 [H]

Synonym: Noca_0803

Alternate gene names: 119715050

Gene position: 846460-847596 (Clockwise)

Preceding gene: 119715049

Following gene: 119715051

Centisome position: 16.98

GC content: 67.81

Gene sequence:

>1137_bases
ATGGATTTCACGATGACAGCGGCGGAACTGCGATTTCGTGACGAGTTGCGCGGGTGGCTCGCGGTGAACCCGCCAGGAGT
GGCGCCGATGGGCGACGAGGCATCCTTCGACTTCCGGCGAGCGTGGCAGCGGCGGATGTACGAGAGCGGCTGGGTCGGCA
TCCACTGGCCCCGGGAGTACGGCGGCCGAGGAGCAAACCCGGTGGAGCTGGCGATCTTCAACGAGGAGCTCGGACGTTCA
GGCGCGCCACGCTTCGCGAACACGATCGCCATCGAGATGGGCGGTCCGACGATCATCACACACGGCACGCCCGCCCAGAA
GGAGCGGCTCCTGGAGCCGATCCTGTCGGCCGAGGAGATCTGGTGCCAGGCGTTCTCGGAACCAGGAGCTGGTTCGGACC
TCGCTTCCCTGCGCACCCGAGCCGATCGCGTGCCCGGCGGCTTCCGGGTCACCGGGCAGAAGGTCTGGACCTCCCTGGCA
CGCCAGGCGAGCTGGTGCATGATGCTGGCGCGCACGGATCCCGACAGCCAGGGACACCGCGGCCTCACGTACTTCCTGAT
GGACATGCAGCAGGACGAGATCGAACCCCGGCCGATCGTGCAGGCAACCGGCGAGAGCGAGTTCAACGAGCTGTTCCTCG
ACGGCGCTTACGTGAGCGACGACCAGGTCGTGGGTGAGGTGGGCAAGGGCTGGCGGGTGGCCATCACCACCCTGATGAAT
GAACGAGCCGGCCTCGCGCTCGCTGCCCAGGTCGACGTCCGACGGGCGCTCGACGAGGCGAAGCGCCAGGTTGTGCTGTC
GGGGCGCATGGACGATCCTCTCGTCCTGGATCGGCTGGCGGATCTCCATGTGAGGGCGGAGGGGCTCCGTCTGCAGACGT
ACCGGGGGCTGAGTGATATCGAGCGCACGGGCGCCCCGGGCCCCAGCGGATCGCTGGCCAAGTTGCAGTGGGCCGCTGTG
AACCAGGCGGTGGCCGAGTTCACGATCGACCTCCTGGGACCGGCTGCTGTCGGCGCTGACTCCCCGGAGATGTACCGCTA
CCTGCGTTCGCGCGCCAACTCGATCGAGGGTGGCACCACCGAGGTCCTCAAGGACATCGTCGCCGAGCGCGTCCTGAGCC
TGCCGAGGTCCCGATGA

Upstream 100 bases:

>100_bases
CCCTGACCGAGGATCAGCCCGAGGCGGTCGCTGCCTTCCGTGAGAAGCGGCCGCCTCGGTTCGGGCGCCGCTAAGCGATG
AGACGACGGAGGACGAAGAC

Downstream 100 bases:

>100_bases
GATTCGACCTGACTCCCGACCAGTCGACCGTGGTCGCAACCCTGCGAGGGTTTCTCGGGGACCAGTTGAGCGACGCGCGC
CGACGCTCGCGCATCGATGG

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MDFTMTAAELRFRDELRGWLAVNPPGVAPMGDEASFDFRRAWQRRMYESGWVGIHWPREYGGRGANPVELAIFNEELGRS
GAPRFANTIAIEMGGPTIITHGTPAQKERLLEPILSAEEIWCQAFSEPGAGSDLASLRTRADRVPGGFRVTGQKVWTSLA
RQASWCMMLARTDPDSQGHRGLTYFLMDMQQDEIEPRPIVQATGESEFNELFLDGAYVSDDQVVGEVGKGWRVAITTLMN
ERAGLALAAQVDVRRALDEAKRQVVLSGRMDDPLVLDRLADLHVRAEGLRLQTYRGLSDIERTGAPGPSGSLAKLQWAAV
NQAVAEFTIDLLGPAAVGADSPEMYRYLRSRANSIEGGTTEVLKDIVAERVLSLPRSR

Sequences:

>Translated_378_residues
MDFTMTAAELRFRDELRGWLAVNPPGVAPMGDEASFDFRRAWQRRMYESGWVGIHWPREYGGRGANPVELAIFNEELGRS
GAPRFANTIAIEMGGPTIITHGTPAQKERLLEPILSAEEIWCQAFSEPGAGSDLASLRTRADRVPGGFRVTGQKVWTSLA
RQASWCMMLARTDPDSQGHRGLTYFLMDMQQDEIEPRPIVQATGESEFNELFLDGAYVSDDQVVGEVGKGWRVAITTLMN
ERAGLALAAQVDVRRALDEAKRQVVLSGRMDDPLVLDRLADLHVRAEGLRLQTYRGLSDIERTGAPGPSGSLAKLQWAAV
NQAVAEFTIDLLGPAAVGADSPEMYRYLRSRANSIEGGTTEVLKDIVAERVLSLPRSR
>Mature_378_residues
MDFTMTAAELRFRDELRGWLAVNPPGVAPMGDEASFDFRRAWQRRMYESGWVGIHWPREYGGRGANPVELAIFNEELGRS
GAPRFANTIAIEMGGPTIITHGTPAQKERLLEPILSAEEIWCQAFSEPGAGSDLASLRTRADRVPGGFRVTGQKVWTSLA
RQASWCMMLARTDPDSQGHRGLTYFLMDMQQDEIEPRPIVQATGESEFNELFLDGAYVSDDQVVGEVGKGWRVAITTLMN
ERAGLALAAQVDVRRALDEAKRQVVLSGRMDDPLVLDRLADLHVRAEGLRLQTYRGLSDIERTGAPGPSGSLAKLQWAAV
NQAVAEFTIDLLGPAAVGADSPEMYRYLRSRANSIEGGTTEVLKDIVAERVLSLPRSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=359, Percent_Identity=27.5766016713092, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI4501859, Length=383, Percent_Identity=25.065274151436, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI4557231, Length=344, Percent_Identity=26.1627906976744, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI187960098, Length=344, Percent_Identity=26.1627906976744, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI226958414, Length=376, Percent_Identity=25.2659574468085, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI76496475, Length=258, Percent_Identity=30.6201550387597, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI4557235, Length=258, Percent_Identity=30.6201550387597, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI226958412, Length=345, Percent_Identity=25.5072463768116, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI21361497, Length=345, Percent_Identity=23.768115942029, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI4501857, Length=345, Percent_Identity=24.3478260869565, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI211971008, Length=329, Percent_Identity=26.1398176291793, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI48976061, Length=329, Percent_Identity=26.1398176291793, Blast_Score=69, Evalue=6e-12,
Organism=Escherichia coli, GI87081958, Length=385, Percent_Identity=23.6363636363636, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786223, Length=335, Percent_Identity=22.6865671641791, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17570075, Length=387, Percent_Identity=24.8062015503876, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17538396, Length=385, Percent_Identity=26.4935064935065, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17508101, Length=364, Percent_Identity=25.5494505494505, Blast_Score=102, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17506239, Length=383, Percent_Identity=26.3707571801567, Blast_Score=101, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17534899, Length=350, Percent_Identity=24.5714285714286, Blast_Score=97, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71990804, Length=213, Percent_Identity=31.4553990610329, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17569725, Length=348, Percent_Identity=24.1379310344828, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI32563615, Length=207, Percent_Identity=31.4009661835749, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17505929, Length=331, Percent_Identity=22.9607250755287, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17551932, Length=331, Percent_Identity=22.9607250755287, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71982178, Length=238, Percent_Identity=27.7310924369748, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71985192, Length=240, Percent_Identity=26.25, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71985184, Length=239, Percent_Identity=26.3598326359833, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24646207, Length=344, Percent_Identity=29.6511627906977, Blast_Score=119, Evalue=5e-27,
Organism=Drosophila melanogaster, GI21356377, Length=365, Percent_Identity=26.3013698630137, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24666513, Length=361, Percent_Identity=26.3157894736842, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24660351, Length=337, Percent_Identity=22.5519287833828, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI281363737, Length=232, Percent_Identity=27.5862068965517, Blast_Score=82, Evalue=8e-16,
Organism=Drosophila melanogaster, GI21355753, Length=361, Percent_Identity=25.207756232687, Blast_Score=81, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 41687; Mature: 41687

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFTMTAAELRFRDELRGWLAVNPPGVAPMGDEASFDFRRAWQRRMYESGWVGIHWPREY
CCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCHHH
GGRGANPVELAIFNEELGRSGAPRFANTIAIEMGGPTIITHGTPAQKERLLEPILSAEEI
CCCCCCCEEEEEECHHHCCCCCCCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHHHHHH
WCQAFSEPGAGSDLASLRTRADRVPGGFRVTGQKVWTSLARQASWCMMLARTDPDSQGHR
HHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHEEEEEECCCCCCCCC
GLTYFLMDMQQDEIEPRPIVQATGESEFNELFLDGAYVSDDQVVGEVGKGWRVAITTLMN
CEEEEEEECHHCCCCCCCCEEECCCCHHHHHEECCCEECCCHHHHHHCCCCEEEHHHHHC
ERAGLALAAQVDVRRALDEAKRQVVLSGRMDDPLVLDRLADLHVRAEGLRLQTYRGLSDI
CCCCEEEEHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHEECCCEEEEECCCHHHH
ERTGAPGPSGSLAKLQWAAVNQAVAEFTIDLLGPAAVGADSPEMYRYLRSRANSIEGGTT
HHCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHCCCCCCCHH
EVLKDIVAERVLSLPRSR
HHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDFTMTAAELRFRDELRGWLAVNPPGVAPMGDEASFDFRRAWQRRMYESGWVGIHWPREY
CCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCHHH
GGRGANPVELAIFNEELGRSGAPRFANTIAIEMGGPTIITHGTPAQKERLLEPILSAEEI
CCCCCCCEEEEEECHHHCCCCCCCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHHHHHH
WCQAFSEPGAGSDLASLRTRADRVPGGFRVTGQKVWTSLARQASWCMMLARTDPDSQGHR
HHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHEEEEEECCCCCCCCC
GLTYFLMDMQQDEIEPRPIVQATGESEFNELFLDGAYVSDDQVVGEVGKGWRVAITTLMN
CEEEEEEECHHCCCCCCCCEEECCCCHHHHHEECCCEECCCHHHHHHCCCCEEEHHHHHC
ERAGLALAAQVDVRRALDEAKRQVVLSGRMDDPLVLDRLADLHVRAEGLRLQTYRGLSDI
CCCCEEEEHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHEECCCEEEEECCCHHHH
ERTGAPGPSGSLAKLQWAAVNQAVAEFTIDLLGPAAVGADSPEMYRYLRSRANSIEGGTT
HHCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHCCCCCCCHH
EVLKDIVAERVLSLPRSR
HHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]