| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is lcfB [H]
Identifier: 119715047
GI number: 119715047
Start: 842999
End: 844618
Strand: Direct
Name: lcfB [H]
Synonym: Noca_0800
Alternate gene names: 119715047
Gene position: 842999-844618 (Clockwise)
Preceding gene: 119715046
Following gene: 119715048
Centisome position: 16.91
GC content: 64.63
Gene sequence:
>1620_bases GTGCTCAACGACATCGTCCCCGTGTCCGATCCCGTGCGTCGTGCGACGTTCGGCGACCAACTGCGACGCAATGCACAGCG CCACCCGGAGCGACCGGCCGTCGTCGGATACGGCGGCCCGCACGGCGAAGGACGCACTCAGCTGACCTTTGCTGAGCTCA ACGAGCGTGCGAACCGTCTGGCGAACGCCCTGGCCGCCCAGGGAGCCGTGAAGGGTGACGTCATGGCCCTGATGGGTCGG AACAACCCGGGTTCGATCGTGGCCTTCTGGGCTGCCGCAAAGCTGGGCGTCGCGGTGACCGGCGTGAACTTCACCTTCAC CGATAGCGAGCTGCACTACCAGCTCGAGCACTCCGGAGCGAAGATCGTCGTCTGCGAGGACGCCTTTTTCGATCGCATCG ACGCGATCTCGTCGCCCCTCCCCGAGCTCAGGATCCGCGTGAGCAACGACTTCTTCGACTCCGCCGCTCCGCAGCCGTGG CAGCGGATGAGCGGGTTGATCGAGTCGGCCAGCGCGGACGAACCCGACTCCGACGTCGACGAGAGCACTCTGGGGATCAT CCCGTACACCAGTGGTACGACGAGCCTGCCCAAGGCCATTGCGATCCCGCAGCGCAACTACTTCGTGTCGATGATCCCGT CCTACACGACTGGGATCGGACTGCTGGAGGAGGACGTCTGGTACTTCACCATGCCGCTCCACACGATCGCGGGCATCGGG ATGCAGATCTGCCTGCTCTCCCTGGGGAACACCATCGTGCTGCCATTCGCCGTCGACGCCGACGAGGCGCTCGACGCCAT CGTCGCGGAGAAGGTCACCGTCGTGGGACAGACGCCGACGTTCTACCTGCAGTTGATCAGGTCGCCGAAGTTCGCCGCTG CCGACCTGCACCGTCTCCGGCGTTGCATCTCCTACGGCGGGACGATGCCGCAGGCGATGTTCGACGCCTTCGAGACCGTG GCGCCCGACGTCTTGTGGATCACTTTGTGGTCGCAGTCGGAGATCACGCAGACACCCACGATCGGCCGCTTTAAGCGACT GGCGGACATACCCAACGGTGATGCTGCCTGGATCGGCAGGCCGACCGCCCAGCTGGAGGTGAGGGTCGTCGACGAGGACG GGAACCCGGCCGCTGAGGGTGAGCTCATCGTCCGGACGCCTGGGGCAATGGCCGGCTATTACAAGGATCCGGAGAGGACG GCGAAGGTCGTGCGCGACGGCTGGATCCACACCAACGACATGGTCCGCATCGATGACGAGGGGAACCTCTACTTCGTCGA TCGGCGCAACGACGTCATCAAGACCGGCGGCATGAACGTTTCGTCGGTCGAGGTGGAACGCACCCTTTACGGTCATCCGG CGGTGCAGGAGGTCGCTGTCGTCGGACTCGCGGATCCGTACTGGATGCAGGTCGTCACCGCCTTCGTCGTCCCCAAGGGG TCTGTCGACGAAGTCGACGTCGAGGACATCCGGGCGTTCTGCAAGAAGACTTTGGCGGGCTACAAGATCCCGAAGGAGAT CCACCTGGTCTCGGCGCTGCCGAAGGACACCCAGGGCAAGATCCTCAAGCGTCAGCTGCGCAGGGACGCCGAGGTTCAGC CGACTCCTGCGAGCCCTTGA
Upstream 100 bases:
>100_bases GCTCGAAGCCATCGTCGAGGCCGCAGACCGGCTCACGGCCGCCGATCCGGCGGCCTCGGACCACACCCCGTAAAGCCCGA CCCGAGAGGAGCGCGTTCCC
Downstream 100 bases:
>100_bases TGACCGCGGCCGCGCACTCGGTCGTGGGCCTTGAGGATCTTGCGCGCCGGGCAGCCCACGGCGATCGGCGTGCACTGTCG CAGGTACTCAGTGTGCTCGA
Product: AMP-dependent synthetase and ligase
Products: NA
Alternate protein names: Long-chain acyl-CoA synthetase [H]
Number of amino acids: Translated: 539; Mature: 539
Protein sequence:
>539_residues MLNDIVPVSDPVRRATFGDQLRRNAQRHPERPAVVGYGGPHGEGRTQLTFAELNERANRLANALAAQGAVKGDVMALMGR NNPGSIVAFWAAAKLGVAVTGVNFTFTDSELHYQLEHSGAKIVVCEDAFFDRIDAISSPLPELRIRVSNDFFDSAAPQPW QRMSGLIESASADEPDSDVDESTLGIIPYTSGTTSLPKAIAIPQRNYFVSMIPSYTTGIGLLEEDVWYFTMPLHTIAGIG MQICLLSLGNTIVLPFAVDADEALDAIVAEKVTVVGQTPTFYLQLIRSPKFAAADLHRLRRCISYGGTMPQAMFDAFETV APDVLWITLWSQSEITQTPTIGRFKRLADIPNGDAAWIGRPTAQLEVRVVDEDGNPAAEGELIVRTPGAMAGYYKDPERT AKVVRDGWIHTNDMVRIDDEGNLYFVDRRNDVIKTGGMNVSSVEVERTLYGHPAVQEVAVVGLADPYWMQVVTAFVVPKG SVDEVDVEDIRAFCKKTLAGYKIPKEIHLVSALPKDTQGKILKRQLRRDAEVQPTPASP
Sequences:
>Translated_539_residues MLNDIVPVSDPVRRATFGDQLRRNAQRHPERPAVVGYGGPHGEGRTQLTFAELNERANRLANALAAQGAVKGDVMALMGR NNPGSIVAFWAAAKLGVAVTGVNFTFTDSELHYQLEHSGAKIVVCEDAFFDRIDAISSPLPELRIRVSNDFFDSAAPQPW QRMSGLIESASADEPDSDVDESTLGIIPYTSGTTSLPKAIAIPQRNYFVSMIPSYTTGIGLLEEDVWYFTMPLHTIAGIG MQICLLSLGNTIVLPFAVDADEALDAIVAEKVTVVGQTPTFYLQLIRSPKFAAADLHRLRRCISYGGTMPQAMFDAFETV APDVLWITLWSQSEITQTPTIGRFKRLADIPNGDAAWIGRPTAQLEVRVVDEDGNPAAEGELIVRTPGAMAGYYKDPERT AKVVRDGWIHTNDMVRIDDEGNLYFVDRRNDVIKTGGMNVSSVEVERTLYGHPAVQEVAVVGLADPYWMQVVTAFVVPKG SVDEVDVEDIRAFCKKTLAGYKIPKEIHLVSALPKDTQGKILKRQLRRDAEVQPTPASP >Mature_539_residues MLNDIVPVSDPVRRATFGDQLRRNAQRHPERPAVVGYGGPHGEGRTQLTFAELNERANRLANALAAQGAVKGDVMALMGR NNPGSIVAFWAAAKLGVAVTGVNFTFTDSELHYQLEHSGAKIVVCEDAFFDRIDAISSPLPELRIRVSNDFFDSAAPQPW QRMSGLIESASADEPDSDVDESTLGIIPYTSGTTSLPKAIAIPQRNYFVSMIPSYTTGIGLLEEDVWYFTMPLHTIAGIG MQICLLSLGNTIVLPFAVDADEALDAIVAEKVTVVGQTPTFYLQLIRSPKFAAADLHRLRRCISYGGTMPQAMFDAFETV APDVLWITLWSQSEITQTPTIGRFKRLADIPNGDAAWIGRPTAQLEVRVVDEDGNPAAEGELIVRTPGAMAGYYKDPERT AKVVRDGWIHTNDMVRIDDEGNLYFVDRRNDVIKTGGMNVSSVEVERTLYGHPAVQEVAVVGLADPYWMQVVTAFVVPKG SVDEVDVEDIRAFCKKTLAGYKIPKEIHLVSALPKDTQGKILKRQLRRDAEVQPTPASP
Specific function: Involved in the degradation of long-chain fatty acids [H]
COG id: COG0318
COG function: function code IQ; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
Gene ontology:
Cell location: Partially Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI156151445, Length=555, Percent_Identity=28.6486486486486, Blast_Score=176, Evalue=6e-44, Organism=Homo sapiens, GI38505220, Length=527, Percent_Identity=28.842504743833, Blast_Score=165, Evalue=1e-40, Organism=Homo sapiens, GI42544132, Length=531, Percent_Identity=25.0470809792844, Blast_Score=145, Evalue=7e-35, Organism=Homo sapiens, GI187761345, Length=549, Percent_Identity=24.7723132969035, Blast_Score=138, Evalue=1e-32, Organism=Homo sapiens, GI187761343, Length=549, Percent_Identity=24.7723132969035, Blast_Score=138, Evalue=1e-32, Organism=Homo sapiens, GI157311624, Length=511, Percent_Identity=24.853228962818, Blast_Score=138, Evalue=2e-32, Organism=Homo sapiens, GI157311622, Length=511, Percent_Identity=24.853228962818, Blast_Score=138, Evalue=2e-32, Organism=Homo sapiens, GI115511026, Length=541, Percent_Identity=26.2476894639556, Blast_Score=137, Evalue=3e-32, Organism=Homo sapiens, GI58082049, Length=520, Percent_Identity=24.8076923076923, Blast_Score=136, Evalue=6e-32, Organism=Homo sapiens, GI122937307, Length=529, Percent_Identity=25.7088846880907, Blast_Score=132, Evalue=1e-30, Organism=Homo sapiens, GI40807357, Length=539, Percent_Identity=26.1595547309833, Blast_Score=118, Evalue=1e-26, Organism=Homo sapiens, GI13375727, Length=537, Percent_Identity=25.1396648044693, Blast_Score=105, Evalue=9e-23, Organism=Homo sapiens, GI227499619, Length=512, Percent_Identity=25, Blast_Score=102, Evalue=1e-21, Organism=Homo sapiens, GI62865631, Length=541, Percent_Identity=24.9537892791128, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI13325055, Length=541, Percent_Identity=24.9537892791128, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI38524616, Length=549, Percent_Identity=26.0473588342441, Blast_Score=95, Evalue=2e-19, Organism=Homo sapiens, GI28416953, Length=552, Percent_Identity=23.5507246376812, Blast_Score=90, Evalue=5e-18, Organism=Homo sapiens, GI13236579, Length=431, Percent_Identity=23.2018561484919, Blast_Score=75, Evalue=1e-13, Organism=Escherichia coli, GI1788107, Length=557, Percent_Identity=27.8276481149013, Blast_Score=184, Evalue=1e-47, Organism=Escherichia coli, GI221142682, Length=496, Percent_Identity=28.8306451612903, Blast_Score=165, Evalue=6e-42, Organism=Escherichia coli, GI145693145, Length=526, Percent_Identity=27.3764258555133, Blast_Score=159, Evalue=5e-40, Organism=Escherichia coli, GI1786810, Length=500, Percent_Identity=26.4, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI1790505, Length=545, Percent_Identity=23.1192660550459, Blast_Score=99, Evalue=7e-22, Organism=Escherichia coli, GI1786529, Length=560, Percent_Identity=24.2857142857143, Blast_Score=72, Evalue=9e-14, Organism=Caenorhabditis elegans, GI71994694, Length=564, Percent_Identity=26.063829787234, Blast_Score=160, Evalue=1e-39, Organism=Caenorhabditis elegans, GI71994703, Length=564, Percent_Identity=26.063829787234, Blast_Score=160, Evalue=1e-39, Organism=Caenorhabditis elegans, GI71994690, Length=564, Percent_Identity=26.063829787234, Blast_Score=160, Evalue=2e-39, Organism=Caenorhabditis elegans, GI17559526, Length=501, Percent_Identity=27.3453093812375, Blast_Score=152, Evalue=3e-37, Organism=Caenorhabditis elegans, GI17538037, Length=509, Percent_Identity=25.9332023575639, Blast_Score=151, Evalue=8e-37, Organism=Caenorhabditis elegans, GI17557194, Length=501, Percent_Identity=24.750499001996, Blast_Score=142, Evalue=3e-34, Organism=Caenorhabditis elegans, GI17560308, Length=565, Percent_Identity=24.6017699115044, Blast_Score=139, Evalue=4e-33, Organism=Caenorhabditis elegans, GI17531443, Length=497, Percent_Identity=23.7424547283702, Blast_Score=139, Evalue=5e-33, Organism=Caenorhabditis elegans, GI17558820, Length=503, Percent_Identity=25.844930417495, Blast_Score=131, Evalue=7e-31, Organism=Caenorhabditis elegans, GI32563687, Length=495, Percent_Identity=25.8585858585859, Blast_Score=126, Evalue=4e-29, Organism=Caenorhabditis elegans, GI17560140, Length=532, Percent_Identity=24.0601503759398, Blast_Score=125, Evalue=7e-29, Organism=Caenorhabditis elegans, GI71996755, Length=536, Percent_Identity=23.6940298507463, Blast_Score=114, Evalue=2e-25, Organism=Caenorhabditis elegans, GI115534440, Length=539, Percent_Identity=24.860853432282, Blast_Score=110, Evalue=2e-24, Organism=Caenorhabditis elegans, GI71985884, Length=375, Percent_Identity=23.4666666666667, Blast_Score=87, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17556356, Length=346, Percent_Identity=23.4104046242775, Blast_Score=68, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6319699, Length=517, Percent_Identity=23.9845261121857, Blast_Score=108, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6319264, Length=552, Percent_Identity=24.4565217391304, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI24581924, Length=554, Percent_Identity=27.6173285198556, Blast_Score=155, Evalue=5e-38, Organism=Drosophila melanogaster, GI18859661, Length=508, Percent_Identity=25.1968503937008, Blast_Score=129, Evalue=5e-30, Organism=Drosophila melanogaster, GI24583465, Length=559, Percent_Identity=24.5080500894454, Blast_Score=123, Evalue=4e-28, Organism=Drosophila melanogaster, GI24583463, Length=559, Percent_Identity=24.5080500894454, Blast_Score=123, Evalue=4e-28, Organism=Drosophila melanogaster, GI281364798, Length=561, Percent_Identity=24.777183600713, Blast_Score=122, Evalue=6e-28, Organism=Drosophila melanogaster, GI20130357, Length=504, Percent_Identity=23.015873015873, Blast_Score=120, Evalue=2e-27, Organism=Drosophila melanogaster, GI21355181, Length=497, Percent_Identity=23.3400402414487, Blast_Score=119, Evalue=4e-27, Organism=Drosophila melanogaster, GI21356441, Length=477, Percent_Identity=25.1572327044025, Blast_Score=119, Evalue=7e-27, Organism=Drosophila melanogaster, GI24648255, Length=506, Percent_Identity=25.296442687747, Blast_Score=114, Evalue=2e-25, Organism=Drosophila melanogaster, GI24648253, Length=506, Percent_Identity=24.901185770751, Blast_Score=113, Evalue=3e-25, Organism=Drosophila melanogaster, GI21356947, Length=552, Percent_Identity=25, Blast_Score=112, Evalue=7e-25, Organism=Drosophila melanogaster, GI45550496, Length=568, Percent_Identity=23.7676056338028, Blast_Score=110, Evalue=3e-24, Organism=Drosophila melanogaster, GI45552801, Length=568, Percent_Identity=23.7676056338028, Blast_Score=110, Evalue=4e-24, Organism=Drosophila melanogaster, GI24656500, Length=514, Percent_Identity=24.9027237354086, Blast_Score=105, Evalue=1e-22, Organism=Drosophila melanogaster, GI281365686, Length=463, Percent_Identity=21.3822894168467, Blast_Score=99, Evalue=6e-21, Organism=Drosophila melanogaster, GI21358303, Length=463, Percent_Identity=21.8142548596112, Blast_Score=99, Evalue=1e-20, Organism=Drosophila melanogaster, GI24648260, Length=506, Percent_Identity=23.7154150197628, Blast_Score=98, Evalue=1e-20, Organism=Drosophila melanogaster, GI24653035, Length=494, Percent_Identity=23.4817813765182, Blast_Score=96, Evalue=5e-20, Organism=Drosophila melanogaster, GI19922652, Length=497, Percent_Identity=22.5352112676056, Blast_Score=95, Evalue=9e-20, Organism=Drosophila melanogaster, GI161076582, Length=508, Percent_Identity=24.0157480314961, Blast_Score=94, Evalue=3e-19, Organism=Drosophila melanogaster, GI24648257, Length=540, Percent_Identity=23.3333333333333, Blast_Score=93, Evalue=4e-19, Organism=Drosophila melanogaster, GI62472339, Length=535, Percent_Identity=23.5514018691589, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI24667955, Length=535, Percent_Identity=23.5514018691589, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI24667959, Length=366, Percent_Identity=25.4098360655738, Blast_Score=78, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020459 - InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.3 [H]
Molecular weight: Translated: 59052; Mature: 59052
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNDIVPVSDPVRRATFGDQLRRNAQRHPERPAVVGYGGPHGEGRTQLTFAELNERANRL CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEHHHHHHHHHHH ANALAAQGAVKGDVMALMGRNNPGSIVAFWAAAKLGVAVTGVNFTFTDSELHYQLEHSGA HHHHHHCCCCCCCEEEEEECCCCCCEEEEEEHHHCCEEEEEEEEEEECCCEEEEEECCCC KIVVCEDAFFDRIDAISSPLPELRIRVSNDFFDSAAPQPWQRMSGLIESASADEPDSDVD EEEEECHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC ESTLGIIPYTSGTTSLPKAIAIPQRNYFVSMIPSYTTGIGLLEEDVWYFTMPLHTIAGIG CCCEEEEEECCCCCCCCCEEECCCCCEEEEECCCHHCCCCEEECCCEEEEEHHHHHHHHH MQICLLSLGNTIVLPFAVDADEALDAIVAEKVTVVGQTPTFYLQLIRSPKFAAADLHRLR HHHHHHHCCCEEEEEEECCHHHHHHHHHHHHEEEEECCHHHHHHHHCCCCHHHHHHHHHH RCISYGGTMPQAMFDAFETVAPDVLWITLWSQSEITQTPTIGRFKRLADIPNGDAAWIGR HHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEECC PTAQLEVRVVDEDGNPAAEGELIVRTPGAMAGYYKDPERTAKVVRDGWIHTNDMVRIDDE CCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEECCCEEEECCC GNLYFVDRRNDVIKTGGMNVSSVEVERTLYGHPAVQEVAVVGLADPYWMQVVTAFVVPKG CCEEEEECCCCEEEECCCCEEEEEEEHHHCCCCCHHHEEEEECCCHHHHHHHHHHHCCCC SVDEVDVEDIRAFCKKTLAGYKIPKEIHLVSALPKDTQGKILKRQLRRDAEVQPTPASP CCCCCCHHHHHHHHHHHHHCCCCCHHEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MLNDIVPVSDPVRRATFGDQLRRNAQRHPERPAVVGYGGPHGEGRTQLTFAELNERANRL CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEHHHHHHHHHHH ANALAAQGAVKGDVMALMGRNNPGSIVAFWAAAKLGVAVTGVNFTFTDSELHYQLEHSGA HHHHHHCCCCCCCEEEEEECCCCCCEEEEEEHHHCCEEEEEEEEEEECCCEEEEEECCCC KIVVCEDAFFDRIDAISSPLPELRIRVSNDFFDSAAPQPWQRMSGLIESASADEPDSDVD EEEEECHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC ESTLGIIPYTSGTTSLPKAIAIPQRNYFVSMIPSYTTGIGLLEEDVWYFTMPLHTIAGIG CCCEEEEEECCCCCCCCCEEECCCCCEEEEECCCHHCCCCEEECCCEEEEEHHHHHHHHH MQICLLSLGNTIVLPFAVDADEALDAIVAEKVTVVGQTPTFYLQLIRSPKFAAADLHRLR HHHHHHHCCCEEEEEEECCHHHHHHHHHHHHEEEEECCHHHHHHHHCCCCHHHHHHHHHH RCISYGGTMPQAMFDAFETVAPDVLWITLWSQSEITQTPTIGRFKRLADIPNGDAAWIGR HHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEECC PTAQLEVRVVDEDGNPAAEGELIVRTPGAMAGYYKDPERTAKVVRDGWIHTNDMVRIDDE CCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEECCCEEEECCC GNLYFVDRRNDVIKTGGMNVSSVEVERTLYGHPAVQEVAVVGLADPYWMQVVTAFVVPKG CCEEEEECCCCEEEECCCCEEEEEEEHHHCCCCCHHHEEEEECCCHHHHHHHHHHHCCCC SVDEVDVEDIRAFCKKTLAGYKIPKEIHLVSALPKDTQGKILKRQLRRDAEVQPTPASP CCCCCCHHHHHHHHHHHHHCCCCCHHEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]