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The map label for this gene is nirD [H]

Identifier: 119714619

GI number: 119714619

Start: 379296

End: 379673

Strand: Direct

Name: nirD [H]

Synonym: Noca_0353

Alternate gene names: 119714619

Gene position: 379296-379673 (Clockwise)

Preceding gene: 119714618

Following gene: 119714620

Centisome position: 7.61

GC content: 70.9

Gene sequence:

>378_bases
GTGAGCACGTCGACCGGGCCCGCCGCGGGGGCGACGTACACGACCGTCTGCGGGCTCGACCAGATCGAGGTCGAGGGCGG
CGTCGTGGCGCTCGTCGACGGCGTCGCGGTCGCAATCTTCCGGACACACGACGGAAACGTCTACGCGATCTCCAACTACG
ACCCTGTCTCCAGGGCGTCGGTGCTCGCCCGCGGAATCGTCGGCACACGTGGCGACGTCCCCGTGGTCGCCTCGCCGATG
CACAAGCAGGCCTACGACCTGCGCACCGGGCAGTGCCTCGACGACGCGGCGGTCCGGGTCCCGACGTACGACGTCCGGGT
GATCGACGGCACCGTGCACGTCGGCGGTCCCCGACCGGAGCACCAGGACAGCACGTGA

Upstream 100 bases:

>100_bases
ATCCCCACATCACGTTCCGGTCCGAGCGCGACCAGGCGGTGCCGGAGGAGTCCTCGGGGCCGGTCGACCTCGGCGCCACG
ATCCCGGTGGGAGCGCCGCG

Downstream 100 bases:

>100_bases
CCGACAGCCTCCCCCTCGCCGGCTTCCGGATCGGCGTGACCGCCGCCCGGAAGGTCGACGAGCAGGTCACCCTGCTCGAG
CGCCGCGGTGCGACGGTGGA

Product: assimilatory nitrite reductase (NAD(P)H) small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MSTSTGPAAGATYTTVCGLDQIEVEGGVVALVDGVAVAIFRTHDGNVYAISNYDPVSRASVLARGIVGTRGDVPVVASPM
HKQAYDLRTGQCLDDAAVRVPTYDVRVIDGTVHVGGPRPEHQDST

Sequences:

>Translated_125_residues
MSTSTGPAAGATYTTVCGLDQIEVEGGVVALVDGVAVAIFRTHDGNVYAISNYDPVSRASVLARGIVGTRGDVPVVASPM
HKQAYDLRTGQCLDDAAVRVPTYDVRVIDGTVHVGGPRPEHQDST
>Mature_124_residues
STSTGPAAGATYTTVCGLDQIEVEGGVVALVDGVAVAIFRTHDGNVYAISNYDPVSRASVLARGIVGTRGDVPVVASPMH
KQAYDLRTGQCLDDAAVRVPTYDVRVIDGTVHVGGPRPEHQDST

Specific function: Required for activity of the reductase [H]

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis nasE [H]

Homologues:

Organism=Escherichia coli, GI1789766, Length=107, Percent_Identity=41.1214953271028, Blast_Score=85, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012748
- InterPro:   IPR017881
- InterPro:   IPR017941 [H]

Pfam domain/function: NA

EC number: =1.7.1.4 [H]

Molecular weight: Translated: 13009; Mature: 12877

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSTGPAAGATYTTVCGLDQIEVEGGVVALVDGVAVAIFRTHDGNVYAISNYDPVSRAS
CCCCCCCCCCCEEEEEECCCEEEECCCEEEEECCEEEEEEEECCCCEEEECCCCCHHHHH
VLARGIVGTRGDVPVVASPMHKQAYDLRTGQCLDDAAVRVPTYDVRVIDGTVHVGGPRPE
HHHHCCCCCCCCCCEEECCCCCHHCCCCCCCCCCCCEEECCCEEEEEEECEEEECCCCCC
HQDST
CCCCC
>Mature Secondary Structure 
STSTGPAAGATYTTVCGLDQIEVEGGVVALVDGVAVAIFRTHDGNVYAISNYDPVSRAS
CCCCCCCCCCEEEEEECCCEEEECCCEEEEECCEEEEEEEECCCCEEEECCCCCHHHHH
VLARGIVGTRGDVPVVASPMHKQAYDLRTGQCLDDAAVRVPTYDVRVIDGTVHVGGPRPE
HHHHCCCCCCCCCCEEECCCCCHHCCCCCCCCCCCCEEECCCEEEEEEECEEEECCCCCC
HQDST
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]