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The map label for this gene is fliA [H]

Identifier: 119714599

GI number: 119714599

Start: 356811

End: 357617

Strand: Direct

Name: fliA [H]

Synonym: Noca_0333

Alternate gene names: 119714599

Gene position: 356811-357617 (Clockwise)

Preceding gene: 119714597

Following gene: 119714600

Centisome position: 7.16

GC content: 77.08

Gene sequence:

>807_bases
TTGCCCGAACGTGCCCGTTTATGCCTCACTTGTCGGGTGACGATCAACGCCCCTGGACCCGCCCCGACCGTCGACCCGGC
CCGGCTCGCCGCCCATCATCTGCCGCTGGTGGCCCATCTGGTGTACGACACGCTGAGGCGGGTGCCGGCAGCCGTCGATC
GTCACGACCTGCTCGCCGTCGGGGTCGACGCCCTCCTGGCTGCGGCGCGCGAGCCCACGGTGGAGCGCCCCTTCGCCGAG
CACGCCTCGGTCCGGATCCGCGCCGCCCTCGTCGAGGAGCTGCGCGCGATCGACTGGGCGGCGCGGGCGGAGCACCCCCG
CCACGCGGCCTCGGCCCGGGCCCGGCTCCTCGCCGCCCTCGCCGACCTGCCCGACGCCGGGGCGGCCGCGCGCGTGCTGG
ACGTCGACCACGATCCGGCCGAGGCCGAGGAGGGGAGCCCCGCGGTCGTGGGCGGCACCACGCGTCCCGCCCACCCTGAT
CGGCGCGACGAGCGCCGGGAGTACGTCGAGGCCGCCCTGGACGAGCTCCCCGAACGACTCCGGCTCGTCGTGCGCGGCTA
CTTCGTCGAGCAGCGGCCGATGGCCGCGGTGGCTGCCCAGGTCGGCGCCAGCGAGGCGCGGGCGGTCCAGCTCCTGGTCG
AAGGGCTGGGACTGCTGCGCGATGCGCTGGCGCTGGCCTTCGGGCCCTCCGCCGACGCGGGTCCCGTCACGAGCACCCGG
GCAGCGTCGTACGCCCGCACCGTCGCCGCCCGCTACGCCGCCCGCCCCGTGCGCGCGCCCCGGGAGGAGCAGCGGACCTC
CGCCTGA

Upstream 100 bases:

>100_bases
GCGGACGTCACGCGACTACGGGTCGGGTCATCCGGAATAGCCCGGACGGGCCACCCGGCAAAGTTTTACCTTCATATCGG
ACGAAATCGGTGTTGTTTTT

Downstream 100 bases:

>100_bases
TCGCGCCCGCGGGCGATCCGGCCCGCGCCTGCGGTCGAGGGCCGGATCGCGGGTCCCGCACTAGCGCCGTCGGCCCGGCG
GCGCTCGGGTTTGGGTGATC

Product: sigma-70 region 4 domain-containing protein

Products: NA

Alternate protein names: Sigma-28; Sigma-F factor [H]

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MPERARLCLTCRVTINAPGPAPTVDPARLAAHHLPLVAHLVYDTLRRVPAAVDRHDLLAVGVDALLAAAREPTVERPFAE
HASVRIRAALVEELRAIDWAARAEHPRHAASARARLLAALADLPDAGAAARVLDVDHDPAEAEEGSPAVVGGTTRPAHPD
RRDERREYVEAALDELPERLRLVVRGYFVEQRPMAAVAAQVGASEARAVQLLVEGLGLLRDALALAFGPSADAGPVTSTR
AASYARTVAARYAARPVRAPREEQRTSA

Sequences:

>Translated_268_residues
MPERARLCLTCRVTINAPGPAPTVDPARLAAHHLPLVAHLVYDTLRRVPAAVDRHDLLAVGVDALLAAAREPTVERPFAE
HASVRIRAALVEELRAIDWAARAEHPRHAASARARLLAALADLPDAGAAARVLDVDHDPAEAEEGSPAVVGGTTRPAHPD
RRDERREYVEAALDELPERLRLVVRGYFVEQRPMAAVAAQVGASEARAVQLLVEGLGLLRDALALAFGPSADAGPVTSTR
AASYARTVAARYAARPVRAPREEQRTSA
>Mature_267_residues
PERARLCLTCRVTINAPGPAPTVDPARLAAHHLPLVAHLVYDTLRRVPAAVDRHDLLAVGVDALLAAAREPTVERPFAEH
ASVRIRAALVEELRAIDWAARAEHPRHAASARARLLAALADLPDAGAAARVLDVDHDPAEAEEGSPAVVGGTTRPAHPDR
RDERREYVEAALDELPERLRLVVRGYFVEQRPMAAVAAQVGASEARAVQLLVEGLGLLRDALALAFGPSADAGPVTSTRA
ASYARTVAARYAARPVRAPREEQRTSA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This alternative sigma factor is specific for the flagellin gene (fliC) expression [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 28678; Mature: 28547

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPERARLCLTCRVTINAPGPAPTVDPARLAAHHLPLVAHLVYDTLRRVPAAVDRHDLLAV
CCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
GVDALLAAAREPTVERPFAEHASVRIRAALVEELRAIDWAARAEHPRHAASARARLLAAL
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ADLPDAGAAARVLDVDHDPAEAEEGSPAVVGGTTRPAHPDRRDERREYVEAALDELPERL
HCCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RLVVRGYFVEQRPMAAVAAQVGASEARAVQLLVEGLGLLRDALALAFGPSADAGPVTSTR
HHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
AASYARTVAARYAARPVRAPREEQRTSA
HHHHHHHHHHHHHHCCCCCCCHHHCCCC
>Mature Secondary Structure 
PERARLCLTCRVTINAPGPAPTVDPARLAAHHLPLVAHLVYDTLRRVPAAVDRHDLLAV
CCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
GVDALLAAAREPTVERPFAEHASVRIRAALVEELRAIDWAARAEHPRHAASARARLLAAL
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ADLPDAGAAARVLDVDHDPAEAEEGSPAVVGGTTRPAHPDRRDERREYVEAALDELPERL
HCCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RLVVRGYFVEQRPMAAVAAQVGASEARAVQLLVEGLGLLRDALALAFGPSADAGPVTSTR
HHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
AASYARTVAARYAARPVRAPREEQRTSA
HHHHHHHHHHHHHHCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1560774; 10984043 [H]