| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119714560
Identifier: 119714560
GI number: 119714560
Start: 311035
End: 312474
Strand: Reverse
Name: 119714560
Synonym: Noca_0293
Alternate gene names: NA
Gene position: 312474-311035 (Counterclockwise)
Preceding gene: 119714561
Following gene: 119714557
Centisome position: 6.27
GC content: 75.42
Gene sequence:
>1440_bases GTGAGCGCCGACATCACCTCGGTCACCGGCGGCTCGACGGGCCTGGCCGCCACGTACGCCGCCGTCCGCGCGCTGGCCGA CGCGTACGACGAGGCCGGCAGCCGGCTGCGCGGCTGGGCGGCGCTGGGGGCCGAGACGATGACGAACCCCGACCTCGCCG AGTCCGCGGTGCTCGCGCCGCTGACGTTCGCCGAGGCCGAGGCCGCGGTCCTGGCCGCGACGACCGGCCCCGACGGGGTC CTGGTCGAATCCCTCGGCTGGGAGGCCGACGCGCTGGCGGTGCGCGCCGTCGTCACCGCGCTCGAGGCGACCGACGCGCT GGTGCGCACCGCCGTCGACGAGCTCGACCGGGCGGTGGGCCGGACCGTCGGCTTCACCCTGGGGGCGACCGCGCCGGCAC TGGTGCCCGTGCTCGCCGCCACGCTGCCGCTGGTGCCCCCGGCGGTCCGCCGCGAGCTGGAGGACCGGCTCGAGCAGTGG GTGGTGGACCACCCGGGCGTGGTGCAGCACGCCGCGAACGGCGGCGGCGGCCTGCTCGAGGGTCTCTGGGACGGCGTCAC CCCGCTCGCTCCGGGCGGCCTGCTCGGCGTACCTCTGCTCGCCCCCGACACCGAGGCCGGCGCCGGCCTGCTGGCACTGC TCTACGGGCCCGAGGGCCACGCCGGGGTGTCCGAGGTGCACCCGCAGGTGTGCACCGACCCGAGCCAGCCGACCGACCTC GAGGGGCTGGTCGCCCACCTCGCGGCGGTGGCCGGGCTCTCGCCCGAGCCCGACTCCCCGCTCAACGGCACCATCGAGAT CCAGACGCTGGACGCCGGCACCGACGGGGTACGGCACATCGTCTACCTGCCCGGGACCGACGACCTCACCACCCTGCCCT GGACCCAGGACGGCGACATCCGCGACGGCGGGACCGACCTGCACTCCGACGCCGGACACCAGACCATCTACCAGCAGGGG ATCCTCCAGGCGATGGCGCAGGCCGGCATCGGGCCGCACGACCCGGTGCTGCTCGTCGGGCACTCGCTGGGCGGCATGGA GGCGGCGGCGATCCTCGGTCACGACAGCGGCTTCAACGTGACGAACGTGGTCACCGCCGGTGCCCCCACGGCCCAGGTCG ACGGGTTCCCGGCCGGCAGCCACGTGCTCTCGCTCGAGCATCACGGTGACCTCGTGCCGGCTGGCGACGGCGCGCCCAAC CCGGACACGGTCGAGCAGACCACCGTCACGTTCGAGGACGACCCGACGGGCATCGTGGACGCCCACGGCTACGGCCACTA CCTCGCCGGGGCCGCGGCCGTCGACGACGCCACCGACCCGTCGGTGCAGGAGCAGCTCGCGAGCCTGCACGCCCACGGCT TCCTCGGCGACGCGGGCGGAGCGGGTGGGCCCGCGGCCATCGTCACGAGCCACGTCTTCCAGATCGTTCGACAACCCTGA
Upstream 100 bases:
>100_bases CCCCTGCCCGGCAGCCGCGACTGGCTCGACGTCGACCTGCCGGGGCTCGGCTGATGACCGCCCCGGCAACGCTCCGCCAC CAGCCGGCGGGAGCACGACC
Downstream 100 bases:
>100_bases GGCGCGCAACCGTCACAGGATGTCGTGCACGAACTCACCCAGCTGCGTCAGGTTCCGGCACTCCACCATCGGCACCACCG CGCCGTACCTGGTCGCCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 479; Mature: 478
Protein sequence:
>479_residues MSADITSVTGGSTGLAATYAAVRALADAYDEAGSRLRGWAALGAETMTNPDLAESAVLAPLTFAEAEAAVLAATTGPDGV LVESLGWEADALAVRAVVTALEATDALVRTAVDELDRAVGRTVGFTLGATAPALVPVLAATLPLVPPAVRRELEDRLEQW VVDHPGVVQHAANGGGGLLEGLWDGVTPLAPGGLLGVPLLAPDTEAGAGLLALLYGPEGHAGVSEVHPQVCTDPSQPTDL EGLVAHLAAVAGLSPEPDSPLNGTIEIQTLDAGTDGVRHIVYLPGTDDLTTLPWTQDGDIRDGGTDLHSDAGHQTIYQQG ILQAMAQAGIGPHDPVLLVGHSLGGMEAAAILGHDSGFNVTNVVTAGAPTAQVDGFPAGSHVLSLEHHGDLVPAGDGAPN PDTVEQTTVTFEDDPTGIVDAHGYGHYLAGAAAVDDATDPSVQEQLASLHAHGFLGDAGGAGGPAAIVTSHVFQIVRQP
Sequences:
>Translated_479_residues MSADITSVTGGSTGLAATYAAVRALADAYDEAGSRLRGWAALGAETMTNPDLAESAVLAPLTFAEAEAAVLAATTGPDGV LVESLGWEADALAVRAVVTALEATDALVRTAVDELDRAVGRTVGFTLGATAPALVPVLAATLPLVPPAVRRELEDRLEQW VVDHPGVVQHAANGGGGLLEGLWDGVTPLAPGGLLGVPLLAPDTEAGAGLLALLYGPEGHAGVSEVHPQVCTDPSQPTDL EGLVAHLAAVAGLSPEPDSPLNGTIEIQTLDAGTDGVRHIVYLPGTDDLTTLPWTQDGDIRDGGTDLHSDAGHQTIYQQG ILQAMAQAGIGPHDPVLLVGHSLGGMEAAAILGHDSGFNVTNVVTAGAPTAQVDGFPAGSHVLSLEHHGDLVPAGDGAPN PDTVEQTTVTFEDDPTGIVDAHGYGHYLAGAAAVDDATDPSVQEQLASLHAHGFLGDAGGAGGPAAIVTSHVFQIVRQP >Mature_478_residues SADITSVTGGSTGLAATYAAVRALADAYDEAGSRLRGWAALGAETMTNPDLAESAVLAPLTFAEAEAAVLAATTGPDGVL VESLGWEADALAVRAVVTALEATDALVRTAVDELDRAVGRTVGFTLGATAPALVPVLAATLPLVPPAVRRELEDRLEQWV VDHPGVVQHAANGGGGLLEGLWDGVTPLAPGGLLGVPLLAPDTEAGAGLLALLYGPEGHAGVSEVHPQVCTDPSQPTDLE GLVAHLAAVAGLSPEPDSPLNGTIEIQTLDAGTDGVRHIVYLPGTDDLTTLPWTQDGDIRDGGTDLHSDAGHQTIYQQGI LQAMAQAGIGPHDPVLLVGHSLGGMEAAAILGHDSGFNVTNVVTAGAPTAQVDGFPAGSHVLSLEHHGDLVPAGDGAPNP DTVEQTTVTFEDDPTGIVDAHGYGHYLAGAAAVDDATDPSVQEQLASLHAHGFLGDAGGAGGPAAIVTSHVFQIVRQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48318; Mature: 48187
Theoretical pI: Translated: 4.01; Mature: 4.01
Prosite motif: PS00120 LIPASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSADITSVTGGSTGLAATYAAVRALADAYDEAGSRLRGWAALGAETMTNPDLAESAVLAP CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCC LTFAEAEAAVLAATTGPDGVLVESLGWEADALAVRAVVTALEATDALVRTAVDELDRAVG EECCCCCEEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RTVGFTLGATAPALVPVLAATLPLVPPAVRRELEDRLEQWVVDHPGVVQHAANGGGGLLE HHHCEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHH GLWDGVTPLAPGGLLGVPLLAPDTEAGAGLLALLYGPEGHAGVSEVHPQVCTDPSQPTDL HHHCCCCCCCCCCCEECCEECCCCCCCCCEEEEEECCCCCCCHHHCCHHHCCCCCCCCCH EGLVAHLAAVAGLSPEPDSPLNGTIEIQTLDAGTDGVRHIVYLPGTDDLTTLPWTQDGDI HHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCEECCCCCCCCC RDGGTDLHSDAGHQTIYQQGILQAMAQAGIGPHDPVLLVGHSLGGMEAAAILGHDSGFNV CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCH TNVVTAGAPTAQVDGFPAGSHVLSLEHHGDLVPAGDGAPNPDTVEQTTVTFEDDPTGIVD HEEEECCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCEEEEEECCCCCCEEE AHGYGHYLAGAAAVDDATDPSVQEQLASLHAHGFLGDAGGAGGPAAIVTSHVFQIVRQP CCCCCHHHCCCHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure SADITSVTGGSTGLAATYAAVRALADAYDEAGSRLRGWAALGAETMTNPDLAESAVLAP CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCC LTFAEAEAAVLAATTGPDGVLVESLGWEADALAVRAVVTALEATDALVRTAVDELDRAVG EECCCCCEEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RTVGFTLGATAPALVPVLAATLPLVPPAVRRELEDRLEQWVVDHPGVVQHAANGGGGLLE HHHCEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHH GLWDGVTPLAPGGLLGVPLLAPDTEAGAGLLALLYGPEGHAGVSEVHPQVCTDPSQPTDL HHHCCCCCCCCCCCEECCEECCCCCCCCCEEEEEECCCCCCCHHHCCHHHCCCCCCCCCH EGLVAHLAAVAGLSPEPDSPLNGTIEIQTLDAGTDGVRHIVYLPGTDDLTTLPWTQDGDI HHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCEECCCCCCCCC RDGGTDLHSDAGHQTIYQQGILQAMAQAGIGPHDPVLLVGHSLGGMEAAAILGHDSGFNV CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCH TNVVTAGAPTAQVDGFPAGSHVLSLEHHGDLVPAGDGAPNPDTVEQTTVTFEDDPTGIVD HEEEECCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCEEEEEECCCCCCEEE AHGYGHYLAGAAAVDDATDPSVQEQLASLHAHGFLGDAGGAGGPAAIVTSHVFQIVRQP CCCCCHHHCCCHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA